Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I53 R1 229 158.0 8090706 91.1% 7370633 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,922,239 T→G intergenic (‑139/+296) gudP ← / ← yqcA putative D‑glucarate transporter/short‑chain flavodoxin, FMN‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,922,2390TG91.2% 388.1 / 23.2 138intergenic (‑139/+296)gudP/yqcAputative D‑glucarate transporter/short‑chain flavodoxin, FMN‑binding
Reads supporting (aligned to +/- strand):  ref base T (6/6);  new base G (64/61);  total (70/68)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.24e-01

Only 100 of 138 total aligned reads displayed.

CTGCGACATCGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGACGGTG  >  NC_000913/2922144‑2922335
                                                                                               |                                                                                                
cTGCGACATCGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCa                                                                                              >  1:3039103/1‑100 (MQ=255)
 tGCGACATCGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAg                                                                                             <  1:540471/100‑1 (MQ=255)
  gCGACATCGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGt                                                                                            >  2:3835969/1‑100 (MQ=255)
     aCATCGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGtata                                                                                         <  1:3301049/100‑1 (MQ=255)
     aCATCGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGtata                                                                                         <  2:1720038/100‑1 (MQ=255)
      gaTCGCCGGGAAATCAGGGGTGTCGTAGGGTTTTTTTTGCTGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATaa                                                                                        <  2:3211390/99‑1 (MQ=255)
         cGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATaaaaa                                                                                     >  1:2066542/1‑100 (MQ=255)
           ccAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAgc                                                                                   <  1:2151798/100‑1 (MQ=255)
            cAGGAAATCAGAGGTGACGTAGGGTGTTTTTTTTTTTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAgcg                                                                                  >  2:1496667/1‑100 (MQ=255)
             aGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAgcgc                                                                                 >  1:1477837/1‑100 (MQ=255)
              ggAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAgcgcg                                                                                >  1:3505997/1‑100 (MQ=255)
                aaaTCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGcc                                                                              >  2:639306/1‑100 (MQ=255)
                 aaTCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCa                                                                             <  1:910340/100‑1 (MQ=255)
                   tCAGAGGTGACGTAGGGTGTTTTTTTTTTTTTTTTTAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAACTTCTCGCCATa                                                                           >  2:907367/1‑100 (MQ=255)
                      gagGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCg                                                                        >  2:2954780/1‑100 (MQ=255)
                        ggTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGc                                                                      >  1:3614808/1‑100 (MQ=255)
                         gTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCt                                                                     <  1:1641065/100‑1 (MQ=255)
                            aCGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCAc                                                                  <  2:2409203/100‑1 (MQ=255)
                            aCGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCAc                                                                  <  2:926822/100‑1 (MQ=255)
                             cGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCAcc                                                                 <  1:2305980/100‑1 (MQ=255)
                             cGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCAcc                                                                 <  1:1812857/100‑1 (MQ=255)
                              gTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCg                                                                <  1:2298717/100‑1 (MQ=255)
                                aGGGTGTTTTTTTTTGTTTTTTTAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTg                                                              >  2:1322661/1‑100 (MQ=255)
                                aGGGTGTCTTTTGCCGGTTTTATAGGCCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTg                                                              <  2:1015429/100‑1 (MQ=255)
                                 gggTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGc                                                             >  1:4013796/1‑100 (MQ=255)
                                 gggTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGc                                                             >  1:3356975/1‑100 (MQ=255)
                                  ggTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGca                                                            <  2:1002509/100‑1 (MQ=255)
                                  ggTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGca                                                            <  2:855381/100‑1 (MQ=255)
                                  ggTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGca                                                            <  1:3197571/100‑1 (MQ=255)
                                  ggTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGca                                                            <  2:3309020/100‑1 (MQ=255)
                                  ggTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGca                                                            >  2:2264216/1‑100 (MQ=255)
                                    tgtTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAAAAAAGAATAAAAAGCGCGCCATAGCGGCTCACCGTGcaac                                                          <  2:3149393/100‑1 (MQ=255)
                                       tttttGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCaacaac                                                       <  2:1969769/100‑1 (MQ=255)
                                        ttttGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAacaaca                                                      <  2:3187953/100‑1 (MQ=255)
                                          ttGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGcaacagatcg                                                    >  1:976394/1‑95 (MQ=255)
                                          ttGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAacaacaca                                                    <  1:1419707/100‑1 (MQ=255)
                                          ttGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAacaacaca                                                    <  2:645145/100‑1 (MQ=255)
                                           tGCCGTTTTTATAGGTCGTTCGCCGAAAACGGCGCGTGTTTATATCTGGCACTAGCAGTACACAAAGCGCGCCATAGAGGCTCACCGTGCAacaacacaa                                                   <  2:2590788/100‑1 (MQ=255)
                                            gCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAacaacacaac                                                  >  1:414803/1‑100 (MQ=255)
                                            gCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAacaacacaac                                                  <  1:733766/100‑1 (MQ=255)
                                            gCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAacaacacaac                                                  <  1:733554/100‑1 (MQ=255)
                                            gCCGTTTTTACGGGTCGTTCGCCTAAGACGGCGCGTGTTTATATCTGGAAAGAAAAAAATAAAAAGCGCGCCATAGCGGCTCACCGTGCAacaacacaac                                                  <  2:518201/100‑1 (MQ=255)
                                             ccGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTGTATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAAcaacacaaca                                                 >  1:3564592/1‑100 (MQ=255)
                                             ccGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAAcaacacaaca                                                 >  1:3969524/1‑100 (MQ=255)
                                              cGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACAt                                                >  1:2941834/1‑100 (MQ=255)
                                              cGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACAt                                                >  1:3021007/1‑100 (MQ=255)
                                                tttttATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTa                                              >  1:3977372/1‑100 (MQ=255)
                                                 ttttATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTaa                                             <  1:240290/100‑1 (MQ=255)
                                                 ttttATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTaa                                             <  2:1306182/100‑1 (MQ=255)
                                                   ttATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATg                                           <  1:652344/100‑1 (MQ=255)
                                                    tataGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGc                                          <  1:813361/100‑1 (MQ=255)
                                                      taGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATGAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGt                                        >  1:3677257/1‑100 (MQ=255)
                                                        ggTCGTTCGCGGAATACGGCGCGTGTTTATATCTTGCAAGAGCAGTATAAAAAACGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTc                                      >  2:3690307/1‑100 (MQ=255)
                                                        ggTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTc                                      >  1:1184616/1‑100 (MQ=255)
                                                        ggTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTc                                      >  2:3953353/1‑100 (MQ=255)
                                                         gTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCa                                     <  2:3537105/100‑1 (MQ=255)
                                                         gTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCa                                     <  1:2163172/100‑1 (MQ=255)
                                                           cacgcGCCGTATTCGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAAt                                   >  1:2393639/5‑100 (MQ=255)
                                                           cGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAAt                                   <  1:2004916/100‑1 (MQ=255)
                                                           cGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAAt                                   >  1:1250679/1‑100 (MQ=255)
                                                           cGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAAt                                   >  1:2916913/1‑100 (MQ=255)
                                                           cGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAAt                                   >  2:3086805/1‑100 (MQ=255)
                                                            gTTCGCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATg                                  >  1:3323790/1‑100 (MQ=255)
                                                                gCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACCACATTAATGCGTTCAATGAGGc                              >  2:2516735/1‑100 (MQ=255)
                                                                gCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGc                              >  2:116352/1‑100 (MQ=255)
                                                                gCCGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGc                              >  2:2217981/1‑100 (MQ=255)
                                                                 ccGAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGcc                             >  2:543678/1‑100 (MQ=255)
                                                                  cGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGccc                            <  1:1287904/100‑1 (MQ=255)
                                                                   gAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCg                           >  1:1121725/1‑100 (MQ=255)
                                                                   gAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCg                           <  1:2390574/100‑1 (MQ=255)
                                                                   gAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCg                           >  2:240010/1‑100 (MQ=255)
                                                                   gAATACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCg                           >  1:9666/1‑100 (MQ=255)
                                                                   gAATACGGCGCGTGTTTATATCGAGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCg                           <  2:1160276/100‑1 (MQ=255)
                                                                      tACGGCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGAtt                        <  1:2684976/100‑1 (MQ=255)
                                                                         ggCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTg                     <  1:2107369/100‑1 (MQ=255)
                                                                         ggCGCGTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTg                     >  2:3075199/1‑100 (MQ=255)
                                                                           cgcgTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGc                   >  1:2872664/1‑100 (MQ=255)
                                                                            gcgTGTTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCa                  <  1:2444919/100‑1 (MQ=255)
                                                                             cgTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCAt                 >  1:3386531/1‑100 (MQ=255)
                                                                              gtgtTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCAtt                >  1:3086528/1‑100 (MQ=255)
                                                                              gtgtTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCAtt                <  1:2884065/100‑1 (MQ=255)
                                                                              gtgtTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACAGTAATGCGTTCAATGAGGCCCGATTGTGGCAtt                >  1:3743487/1‑100 (MQ=255)
                                                                                gtTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAg              >  1:1016023/1‑100 (MQ=255)
                                                                                gtTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAg              >  2:1012133/1‑100 (MQ=255)
                                                                                gtTTATATCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAg              >  2:155578/1‑100 (MQ=255)
                                                                                   tataTCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGccc           >  2:2576614/1‑100 (MQ=255)
                                                                                   tataTCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGccc           >  2:1914174/1‑100 (MQ=255)
                                                                                    atatCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCt          <  2:3864320/100‑1 (MQ=255)
                                                                                     tatCTGGCGAGGGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACAGATCATTAATGCGTTCAATGGGGCCCGATTTTGGCATTAGCCCTg         <  2:1225953/100‑1 (MQ=255)
                                                                                     tatCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTg         <  1:3071287/100‑1 (MQ=255)
                                                                                     tatCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTg         >  1:1668614/1‑100 (MQ=255)
                                                                                     tatCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTg         <  1:243919/100‑1 (MQ=255)
                                                                                      atCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTgg        >  1:217180/1‑100 (MQ=255)
                                                                                      atCTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTgg        <  1:1844431/100‑1 (MQ=255)
                                                                                        ccggCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATCAGTGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGAc      <  2:2949810/98‑1 (MQ=255)
                                                                                        cTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGAc      >  1:1526045/1‑100 (MQ=255)
                                                                                        cTGGCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGAc      <  1:145483/100‑1 (MQ=255)
                                                                                          ggCAAGAGCATTATAAAAAGCGCGCCATAGCGTCTCACCGTGCAACAACACAACATTATTGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGACgg    <  2:1383764/100‑1 (MQ=255)
                                                                                           gCAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGACGGt   >  2:2988075/1‑100 (MQ=255)
                                                                                            cAAGAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGACGGTg  >  1:793388/1‑100 (MQ=255)
                                                                                               |                                                                                                
CTGCGACATCGCCAGGAAATCAGAGGTGACGTAGGGTGTTTTTTGCCGTTTTTATAGGTCGTTCGCCGAATACGGCGCGTGTTTATATCTGGCAATAGCAGTATAAAAAGCGCGCCATAGCGGCTCACCGTGCAACAACACAACATTAATGCGTTCAATGAGGCCCGATTTTGGCATTAGCCCTGGACGGTG  >  NC_000913/2922144‑2922335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A