Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F380 I2 R1
|
12 |
199.9 |
10273419 |
92.0% |
9451545 |
99.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,777,977 |
A→T |
intergenic (+195/+169) |
ypjF → / ← ypjA |
CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,777,977 | 0 | A | T | 99.1%
| 775.6
/ NA
| 229 | intergenic (+195/+169) | ypjF/ypjA | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system/adhesin‑like autotransporter |
| Reads supporting (aligned to +/- strand): ref base A (0/1); major base T (98/128); minor base G (0/2); total (98/131) |
| Fisher's exact test for biased strand distribution p-value = 5.08e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 229 total aligned reads displayed.
TTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGAC > NC_000913/2777882‑2778071
|
ttCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGccc < 1:3889233/99‑1 (MQ=255)
tCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCcca > 1:3589373/1‑99 (MQ=255)
tttAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCccacca > 2:2141013/1‑99 (MQ=255)
aGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATc > 2:2426323/1‑99 (MQ=255)
aGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATc < 2:2917167/99‑1 (MQ=255)
aGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATc < 1:4346709/99‑1 (MQ=255)
ggATCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCa < 1:3472259/99‑1 (MQ=255)
ggACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCccaccagatc > 2:3770078/1‑95 (MQ=255)
ggACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCa > 1:3121256/1‑99 (MQ=255)
ggACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCa > 1:2538599/1‑99 (MQ=255)
ggACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCa < 2:4871526/99‑1 (MQ=255)
gACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCAt > 1:4278561/1‑99 (MQ=255)
gACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTAAGACTCCGCCTGCCCACCAATCAt > 2:1128277/1‑99 (MQ=255)
aCCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATg < 2:1030757/99‑1 (MQ=255)
aCCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATg > 2:4571236/1‑99 (MQ=255)
aCCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAAACATg > 2:2634156/1‑99 (MQ=255)
ccAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCACTTCAGACTCCGCCTGCACACCAATCATGa > 1:1512146/1‑99 (MQ=255)
ccAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGa > 1:1397952/1‑99 (MQ=255)
ccAACAATGGGACCAAAATGAAAATTGAACTAAAGATTACAATAAATTTAACAACAAGTTACACCACCAATTCCGACTCCGCCTGCCCACCAATCATGa > 2:3116123/1‑99 (MQ=255)
caacaaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCTCACCAATCATGAt > 1:1717445/1‑99 (MQ=255)
caacaaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGAt > 2:4966033/1‑99 (MQ=255)
caacaaTGAGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGAt < 2:3912209/99‑1 (MQ=255)
acaaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTg > 1:2253359/1‑99 (MQ=255)
acaaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTg > 2:2070620/1‑99 (MQ=255)
caaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTgg > 1:2214396/1‑99 (MQ=255)
aaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGa > 1:4982390/1‑99 (MQ=255)
aaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGa < 2:1276989/99‑1 (MQ=255)
aaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGa < 2:3088662/99‑1 (MQ=255)
aaTGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAAGTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGa < 2:3230381/99‑1 (MQ=255)
tGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACg < 1:530310/99‑1 (MQ=255)
ggACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGCTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGgt > 2:394330/1‑99 (MQ=255)
gACCAAAATGAAAATTGAACTGAAGAGTACAATCAATTTAACAACAAGATACACAACCAATTCAGACTCCGCCTGCCCACCAACCATGATTGGACggcg > 2:525829/1‑97 (MQ=255)
aCCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGgtgt < 2:3782879/99‑1 (MQ=255)
ccAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACAAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTa > 2:1665870/1‑99 (MQ=255)
cAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTaa < 2:3276668/99‑1 (MQ=255)
cAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTaa < 1:4205212/99‑1 (MQ=255)
tctaTGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAg < 1:1471421/96‑1 (MQ=255)
aaaaTGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAg < 2:2770812/99‑1 (MQ=255)
aaaaTGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAg < 2:4220444/99‑1 (MQ=255)
aaaaTGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAg > 2:915323/1‑99 (MQ=255)
aaaaTGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAg < 1:3095072/99‑1 (MQ=255)
aaaaCGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAg > 1:2520025/1‑99 (MQ=255)
aaTGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGa > 2:77549/1‑99 (MQ=255)
ataaaaaTCGAACTGAAGATACCAATCAATTTAACAACCATTTACGTAACCAATTCAGTCTCCGCCTGCCCACCAGTCATGCTTGGACGGTGTAAGGac < 2:4659500/96‑1 (MQ=255)
tGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGaga > 2:1439656/1‑97 (MQ=255)
gAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGacaa < 1:3412819/99‑1 (MQ=255)
gAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGacaa > 1:4072484/1‑99 (MQ=255)
aaaaTTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGagaac < 2:4282821/99‑1 (MQ=255)
aaaaTTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGacaac < 2:1392726/99‑1 (MQ=255)
aaTTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAacac < 2:4055307/99‑1 (MQ=255)
aTTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACAcc < 1:2765139/99‑1 (MQ=255)
gAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGTACGGTGTAAGGACAACACcaac < 2:443441/99‑1 (MQ=255)
aaCTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACcaaca > 1:1125605/1‑99 (MQ=255)
cTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACaaa > 2:344118/1‑99 (MQ=255)
tGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACaaaa > 2:619263/1‑99 (MQ=255)
gaGATTACAACCTATTTAACAACAAGTTACACAAACAATTCAGACTCTGCCTGCCCGCCAATCATGATTGTATGGTGTAAGGACAACACCAACAAAAAc < 2:2244266/98‑1 (MQ=255)
aaGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAAc > 1:2419018/1‑99 (MQ=255)
aaGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAAc > 1:4867662/1‑99 (MQ=255)
aTTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAgg > 1:1996030/1‑99 (MQ=255)
tACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGaa > 2:3381149/1‑99 (MQ=255)
tACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGaa < 1:1320301/99‑1 (MQ=255)
tACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGaa < 2:2448672/99‑1 (MQ=255)
aatcaatTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGtt < 1:3317477/99‑1 (MQ=255)
aatcaatTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGtt < 1:3041323/99‑1 (MQ=255)
atcaatTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGAAAACAACAACAAAAACAGGAAGTTa < 2:690590/99‑1 (MQ=255)
tcaatTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACAGTGTAAGGCCAACACCAACAAAAACAGGAAGTTAg > 2:3643054/1‑99 (MQ=255)
caatTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGa < 2:1898180/99‑1 (MQ=255)
aatTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGaa < 1:4691089/99‑1 (MQ=255)
aatTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGaa < 2:1991432/99‑1 (MQ=255)
atTTAACAACAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAg > 1:17554/1‑99 (MQ=255)
aacaacAAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGtctc > 1:1941977/1‑99 (MQ=255)
aacaacAAGTTACACAACCAATTCAGACTCCGCCTGCCAACCAATCATGATTGGACGGTGTAAGAAAAAAAAAAAAAAAAACAGGAAGTTAGAAGtctc < 2:1855389/99‑1 (MQ=255)
acaacaAGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCa < 2:4914218/99‑1 (MQ=255)
caacaaGTTACACAACCAATTCAGACGCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAGAACAGGAAGTTAGAAGTCTCAg < 1:1016459/99‑1 (MQ=255)
aacaaGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGc > 1:2204720/1‑99 (MQ=255)
acaaGTTACACAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCa > 1:2175817/1‑99 (MQ=255)
acacAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACAcc < 1:4270949/99‑1 (MQ=255)
acacAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACAcc > 1:4448993/1‑99 (MQ=255)
acacAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACAcc > 1:43670/1‑99 (MQ=255)
acacAACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACAcc > 2:1440934/1‑99 (MQ=255)
cacaACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCg < 2:1730548/99‑1 (MQ=255)
acaACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGa > 1:3216189/1‑99 (MQ=255)
caACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCgtc < 1:1853062/99‑3 (MQ=255)
caACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGAc < 2:2165457/99‑1 (MQ=255)
caACCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGAc < 1:945983/99‑1 (MQ=255)
aaCCAATTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGAcc > 1:4995302/1‑99 (MQ=255)
aaTTCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGAc > 1:3968008/1‑99 (MQ=255)
ttCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACgg < 1:178090/99‑1 (MQ=255)
gtCAGTCTCCGCCTGCCCACCAATCATGATGGGACGGTGTAAGGACAACACCAACAAAAACAGTAAGTTAGAAGTCTCAGCAAAACACCGACCAGACgg < 2:1481047/98‑1 (MQ=255)
tCAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGt < 1:2099520/99‑1 (MQ=255)
cAGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAAAAGAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTg < 2:647153/99‑1 (MQ=255)
aGACTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTga < 2:4807807/99‑1 (MQ=255)
gACCCCGCCTGCCCACCAATCATGGTTGGAGGGGGTAGGGACAACACCAGAAAGAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTgag < 2:3324409/99‑1 (MQ=255)
aCTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTgagg < 1:823023/99‑1 (MQ=255)
aCTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAAAAAAAAAAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACAAGACGGTgagg < 2:795363/99‑1 (MQ=255)
cTCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTgagga < 1:5096336/99‑1 (MQ=255)
tCCGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTgaggag < 1:1534315/99‑1 (MQ=255)
cGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGAc < 2:3810470/99‑1 (MQ=255)
cGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGAc < 1:770730/99‑1 (MQ=255)
cGCCTGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGAc < 2:702889/99‑1 (MQ=255)
|
TTTCTTTTAGGACCAACAATGGGACCAAAATGAAAATTGAACTGAAGATTACAATCAATTTAACAACAAGTTACACAACCAATTCAGACTCCGCCAGCCCACCAATCATGATTGGACGGTGTAAGGACAACACCAACAAAAACAGGAAGTTAGAAGTCTCAGCAAAACACCGACCAGACGGTGAGGAGAC > NC_000913/2777882‑2778071
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
