Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F184 I1 R1 32 17.0 340811 99.5% 339106 149.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC USA300TCH1516_ALE 1,747,382 (TAC)3→2 coding (2065‑2067/2280 nt) USA300HOU_RS08710 ← Heme uptake protein MmpL11

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1747374 1747376 3 21 [0] [0] 22 USA300HOU_RS08710 Heme uptake protein MmpL11

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1747377 =0 (0.000)16 (1.000) 15/280 0.2 100% coding (2072/2280 nt) USA300HOU_RS08710 Heme uptake protein MmpL11
?USA300TCH1516_ALE = 1747373 0 (0.000)coding (2076/2280 nt) USA300HOU_RS08710 Heme uptake protein MmpL11

GATK/CNVnator alignment

N/A