Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
530,395 |
G→T |
P19H (CCC→CAC) |
ybbB ← |
tRNA 2‑selenouridine synthase, selenophosphate‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 530,395 | 0 | G | T | 100.0%
| 296.0
/ NA
| 103 | P19H (CCC→CAC) | ybbB | tRNA 2‑selenouridine synthase, selenophosphate‑dependent |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (103/0); total (103/0) |
Only 100 of 103 total aligned reads displayed.
GCTCAAACTCGATAGGGGCGCGAACATCAATAATGGGCGT > W3110S.gb/530360‑530399
|
gCTCAAACTCGATAGGGGCGCGTACATCAATAATGTGCGt > 1:1463367/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCg > 1:615076/1‑39 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCg > 1:881181/1‑39 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCg > 1:1159488/1‑39 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCg > 1:777399/1‑39 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:50579/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:6218/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:611952/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:608895/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:604476/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:601258/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:565552/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:53739/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:535137/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:529468/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:520063/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:629452/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:503794/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:492573/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:482887/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:482757/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:479795/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:465966/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:424415/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:414071/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:389602/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:380202/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:815463/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:988969/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:980030/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:976741/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:965362/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:954328/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:946016/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:928436/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:927716/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:864716/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:854234/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:83699/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:62257/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:788367/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:745148/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:716505/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:712183/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:704141/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:691106/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:667863/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:663477/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:657838/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:370207/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:62278/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1178153/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1385985/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1342240/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1335071/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1324246/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1321508/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1313297/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1313238/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1192481/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1188342/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1178554/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1178508/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1388984/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1177784/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1145274/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1143332/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1113700/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1111411/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1088352/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:10718/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1060376/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1046825/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1040073/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1035501/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1616391/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:35116/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:349119/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:321437/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:319593/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:280435/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:251919/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:215245/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:19262/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1645063/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1634135/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1627977/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:162311/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1033347/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1573873/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1572410/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:156504/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1519841/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1518342/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1495457/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1466872/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1449135/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1446505/1‑40 (MQ=255)
gCTCAAACTCGATAGGGGCGCGAACATCAATAATGTGCGt > 1:1434528/1‑40 (MQ=255)
gCTCAAACTAGATAGGGGCGCGAACATCAATAATGTGCGt > 1:660709/1‑40 (MQ=255)
|
GCTCAAACTCGATAGGGGCGCGAACATCAATAATGGGCGT > W3110S.gb/530360‑530399
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
