Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
530,879 |
C→T |
A189A (GCG→GCA) |
ybbS ← |
transcriptional activator of the allD operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 530,879 | 0 | C | T | 100.0%
| 476.1
/ NA
| 165 | A189A (GCG→GCA) | ybbS | transcriptional activator of the allD operon |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (165/0); total (165/0) |
Only 100 of 165 total aligned reads displayed.
GGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGC > W3110S.gb/530862‑530923
|
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAAc > 1:979610/1‑41 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGtt > 1:247618/1‑44 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGcc > 1:692090/1‑48 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGcc > 1:537804/1‑48 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCgg > 1:1031488/1‑53 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:623073/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:251327/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:616418/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:603108/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:600280/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:568279/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:562583/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:557161/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:551437/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:525458/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:493051/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:459669/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:4460/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:414156/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:383158/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:379298/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:367792/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:350895/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:350412/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:345726/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:31158/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:952315/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:801750/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:945395/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:889996/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:874368/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:864289/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:855381/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:841652/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:836501/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:828062/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:825493/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:823802/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:628896/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:778255/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:76204/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:754384/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:745709/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:743648/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:728765/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:698577/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:651087/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:649275/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:641967/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1276274/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1453917/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:248587/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1419747/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1379835/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1358647/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1348862/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1328503/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1320351/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1307321/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1299520/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1283546/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1438792/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1273108/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1241497/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1198780/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1193720/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1170440/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1137465/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1114321/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1100358/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1065684/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1026810/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1011280/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1479861/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:246374/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:212280/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:187611/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:175060/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1627369/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:161574/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1595467/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1575996/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1569729/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1547729/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1533661/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1454523/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1532238/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1522930/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:151600/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1510865/1‑62 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:478254/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:1008237/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:1084899/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:217916/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:1134364/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:165540/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:434368/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccg > 1:1289369/1‑61 (MQ=255)
ggAAAGCGCCGCAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATc > 1:273876/1‑59 (MQ=255)
ggAAAGCGCC‑CAACTGTGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATccgc > 1:1365328/1‑61 (MQ=255)
|
GGAAAGCGCCGCAACTGCGCTTCTGTTAGCGGCTCTTCAACGTTCGCCAGCGGATGATCCGC > W3110S.gb/530862‑530923
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
