Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
565,619 |
T→A |
intergenic (‑35/‑55) |
ybcC ← / → ybcD |
predicted exonuclease/DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 565,619 | 0 | T | A | 100.0%
| 475.7
/ NA
| 168 | intergenic (‑35/‑55) | ybcC/ybcD | predicted exonuclease/DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (168/0); total (168/0) |
Only 100 of 168 total aligned reads displayed.
AGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTG > W3110S.gb/565615‑565676
|
aGCGAGTCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1048897/1‑62 (MQ=255)
aGCGAGGCCTGTATCTGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1125397/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTg > 1:623457/1‑37 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:357423/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:609225/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:585154/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:568163/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:56719/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:530664/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:514246/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:502974/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:484764/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:436200/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:432027/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:376644/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:371615/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:664005/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:353082/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:347991/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:342298/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:313521/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:289389/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:2674/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:259132/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:257677/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:251273/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:231835/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:820515/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:996451/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:985674/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:972620/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:919474/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:90244/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:897026/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:883481/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:871992/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:867915/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:860761/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:837037/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:216329/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:812158/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:789475/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:78261/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:776811/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:729226/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:7223/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:704837/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:687206/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:671610/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:666336/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1191887/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1027166/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1351019/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1333373/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1301926/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1291172/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1280633/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1269999/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1244618/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1240329/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1230331/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1211507/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1351620/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1185323/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1175801/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1167647/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1139271/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1129567/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1109679/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1079599/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1066723/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1065257/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1042663/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1033419/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1502048/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:165571/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1634292/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1609908/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:160978/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1596194/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1576426/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1535088/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1530616/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1514818/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1355878/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1497957/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1487021/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1442333/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1423041/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1407232/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1403627/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1385644/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1384125/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1381372/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:1360439/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggct > 1:404045/1‑59 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggct > 1:1543884/1‑59 (MQ=255)
aGCGAGGCCTGTATCCGGATGCAGAGTCTTATCCGTCGAAATCGAACGCGCactact > 1:1039766/1‑57 (MQ=255)
aGCGAGGCCTGTATCCGGATCCAGAGTCTTATCCGTGGAAATCGAACGCGCACTACtggctg > 1:975619/1‑62 (MQ=255)
aGCGAGGCCTGTATCCGGATACAGAGTCTTATCCGTGGAAATCGa > 1:1361232/1‑45 (MQ=255)
|
AGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTG > W3110S.gb/565615‑565676
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
