Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
885,571 |
C→A |
D28Y (GAT→TAT) |
ybjH ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 885,571 | 0 | C | A | 100.0%
| 577.2
/ NA
| 201 | D28Y (GAT→TAT) | ybjH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (201/0); total (201/0) |
Only 100 of 201 total aligned reads displayed.
CCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAG > W3110S.gb/885547‑885608
|
gcacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1146710/2‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGacac > 1:1264267/1‑36 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACtt > 1:1560128/1‑38 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACtt > 1:794554/1‑38 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACt > 1:1464796/1‑37 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCcaca > 1:1073579/1‑53 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCTCACCAGTAAAg > 1:895975/1‑62 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTaaa > 1:1428260/1‑61 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTa > 1:506972/1‑59 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:556278/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:530881/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:542292/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:549475/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:402654/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:570085/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:624225/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:646158/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:488982/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:467624/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:680148/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:392708/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:346161/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:33415/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:323811/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:309517/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:295900/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:291385/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:267484/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:254604/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:762255/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:990898/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:971580/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:964709/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:943170/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:902567/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:864622/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:855343/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:842019/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:780527/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:772020/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:656535/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:752655/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:746585/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:721430/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:717225/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:711449/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:704818/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:699696/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:690163/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:22226/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:668674/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1197050/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:239883/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1371060/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1330757/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1299941/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1259045/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1250028/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1237838/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1223596/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1211240/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1201455/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1198177/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1404152/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1188986/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1177818/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1164896/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:11501/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1112751/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1097518/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1086312/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1062203/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1049170/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1028630/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1012476/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1592821/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1000209/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:213947/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:207637/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:200403/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:191178/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:188550/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:174658/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1638394/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1630451/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1431227/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1567342/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1538335/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1537039/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1508552/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1502826/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1493301/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1481327/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1462917/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1443694/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTAGTGCCATCGCCACACCAGTAAAg > 1:890229/1‑62 (MQ=38)
ccacTTTGTATCCACTCGGCACATAGACGGAGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:301904/1‑62 (MQ=38)
ccacTTTGTATCCACTCGGCACAAAGACGCTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:953494/1‑62 (MQ=38)
ccacTTTGTATCCACTAGGCACATAGACGGTGACACTTTGTGCCATc > 1:1582185/1‑47 (MQ=37)
ccacTTTGTATCCACACGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:436617/1‑62 (MQ=38)
|
CCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAG > W3110S.gb/885547‑885608
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
