Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
885,587 |
C→T |
A22A (GCG→GCA) |
ybjH ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 885,587 | 0 | C | T | 100.0%
| 573.3
/ NA
| 196 | A22A (GCG→GCA) | ybjH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (196/0); total (196/0) |
Only 100 of 196 total aligned reads displayed.
CCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAG > W3110S.gb/885547‑885608
|
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCTCCACACCAGTAAAg > 1:1017103/1‑62 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCa > 1:1186126/1‑56 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTaagg > 1:89979/1‑60 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTaaa > 1:1119278/1‑61 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTa > 1:506972/1‑59 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:392708/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:674488/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:656535/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:646158/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:624225/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:570085/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:556278/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:549475/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:542292/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:530881/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:488982/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:467624/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:402654/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:699696/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:346161/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:33415/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:323811/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:309517/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:295900/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:291385/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:267484/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:254604/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:239883/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:780527/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:996910/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:983236/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:968640/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:954736/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:950935/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:933105/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:895172/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:888422/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:857148/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:851051/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:805953/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:680148/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:772020/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:762255/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:752655/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:746585/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:721430/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:717225/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:711449/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:704818/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:234122/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:690163/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1197296/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1412818/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1390295/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1371060/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1330757/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1299941/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1263873/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1254306/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:124350/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1237422/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1214491/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1203925/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1199083/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:215685/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1195278/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1171750/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:116288/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1148233/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1108891/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1092892/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1077031/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1069131/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1051529/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1032682/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1008892/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1438998/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1000209/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:211423/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:20138/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:19871/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:190093/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:184454/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1638899/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1634420/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1602139/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1586262/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1581033/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:156477/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1538335/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1537039/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1508552/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1502826/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1493301/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1481327/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1464335/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:1458582/1‑62 (MQ=39)
ccacTTTGTATCCACTCGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGAAAAg > 1:1428873/1‑62 (MQ=255)
ccacTTTGTATCCACTCGGCACATAGACGGAGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:301904/1‑62 (MQ=38)
ccacTTTGTATCCACACGGCACATAGACGGTGACACTTTGTGCCATCGCCACACCAGTAAAg > 1:436617/1‑62 (MQ=38)
|
CCACTTTGTATCCACTCGGCACATCGACGGTGACACTTTGCGCCATCGCCACACCAGTAAAG > W3110S.gb/885547‑885608
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
