Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
897,909 |
Δ1 bp |
coding (404/846 nt) |
potI → |
putrescine transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 897,908 | 0 | C | . | 100.0%
| 45.9
/ NA
| 12 | coding (403/846 nt) | potI | putrescine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/0); total (12/0) |
TTCGTCGCGCTTGCTCATGCCATTGGCTGGCCTGCGGACCGCGGTATGCTCACC > W3110S.gb/897878‑897931
|
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTAt > 1:1100836/1‑46 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:1274160/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:1362237/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:1568982/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:254067/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:36245/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:516504/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:61656/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:723056/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:879264/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAcc > 1:980475/1‑53 (MQ=255)
ttCGTCGCGCTTGCTCATGCCATTGGCTGG‑CTGCGGACCGCGGTATGCTCAc > 1:931940/1‑52 (MQ=255)
|
TTCGTCGCGCTTGCTCATGCCATTGGCTGGCCTGCGGACCGCGGTATGCTCACC > W3110S.gb/897878‑897931
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
