Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,062,649 |
Δ1 bp |
coding (429/600 nt) |
torD → |
chaperone involved in maturation of TorA subunit of trimethylamine N‑oxide reductase system I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,062,646 | 0 | G | . | 100.0%
| 98.1
/ NA
| 24 | coding (426/600 nt) | torD | chaperone involved in maturation of TorA subunit of trimethylamine N‑oxide reductase system I |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (24/0); total (24/0) |
GCTCAGCCATCTGCATTTTTCGCTGGGAGAGGGGACCGTTCCTGCGCG > W3110S.gb/1062616‑1062663
|
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTgcg > 1:383627/1‑45 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:323830/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:926061/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:810639/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:789539/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:765970/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:663779/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:623382/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:4721/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:466617/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:428646/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:389326/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1003522/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:287370/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1561632/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1373513/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1317785/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1314907/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1254921/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1235350/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1153456/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1133899/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1077533/1‑47 (MQ=255)
gCTCAGCCATCTGCATTTTTCGCTGGGAGA‑GGGACCGTTCCTGcgcg > 1:1015484/1‑47 (MQ=255)
|
GCTCAGCCATCTGCATTTTTCGCTGGGAGAGGGGACCGTTCCTGCGCG > W3110S.gb/1062616‑1062663
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
