Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,578,992 |
A→C |
T114T (ACT→ACG) |
yddB ← |
predicted porin protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,578,992 | 0 | A | C | 100.0%
| 1017.2
/ NA
| 346 | T114T (ACT→ACG) | yddB | predicted porin protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (346/0); total (346/0) |
Only 100 of 346 total aligned reads displayed.
GTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACC > W3110S.gb/1578980‑1579042
|
gTTCAGGTTATTCGTTGCACTAATACCTTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:59106/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAGATAGGCATTCTGGTAGGGCGACGCAc > 1:52944/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATa > 1:1120633/1‑39 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGc > 1:1326655/1‑55 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCg > 1:1008554/1‑56 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCa > 1:748934/1‑61 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCa > 1:1217188/1‑61 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCa > 1:1573083/1‑61 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCa > 1:253258/1‑61 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCa > 1:414813/1‑61 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCa > 1:896678/1‑61 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCa > 1:950193/1‑61 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:555967/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:541511/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:562477/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:575539/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:535779/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:325063/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:599708/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:516660/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:494451/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:483878/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:456902/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:435034/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:430034/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:421209/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:401725/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:386977/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:347732/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:287498/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:778726/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:993075/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:971373/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:931120/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:907653/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:889066/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:879714/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:843294/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:83257/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:826756/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:81582/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:806223/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:603450/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:756815/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:736521/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:725419/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:693117/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:682735/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:673929/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:659668/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:65511/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:651474/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:623509/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1203033/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1414014/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1391237/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1384043/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1361058/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1342549/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1332692/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1301976/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1271774/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1256705/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1250493/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1232505/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:300949/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1193085/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1183301/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1170358/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1163628/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1143386/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1087819/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1082301/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1059660/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1050595/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1016755/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1461286/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1001557/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:279543/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:261153/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:205539/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:196814/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:179634/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:173640/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1644833/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1634520/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1612395/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1597600/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1555531/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1543500/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1534374/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1530486/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1515293/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1498256/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1480175/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1469674/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCAc > 1:1450957/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCCACGCAc > 1:225641/1‑62 (MQ=255)
gTTCAGGTTATTCGTTGCACTAATACCGACAATCAAATAGGCAt > 1:995909/1‑44 (MQ=255)
gTTCAGGTTATTCGTTGAACTAATACCGTCAATCAAATAGGCa > 1:310405/1‑43 (MQ=38)
|
GTTCAGGTTATTAGTTGCACTAATACCGTCAATCAAATAGGCATTCTGGTAGGGCGACGCACC > W3110S.gb/1578980‑1579042
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
