Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,615,140 |
G→A |
D426D (GAC→GAT) |
yneI ← |
predicted aldehyde dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,615,140 | 0 | G | A | 100.0%
| 227.9
/ NA
| 80 | D426D (GAC→GAT) | yneI | predicted aldehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/80); total (0/80) |
TTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCAC > W3110S.gb/1615114‑1615174
|
ttCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1101031/61‑1 (MQ=255)
tCACTCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:552423/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCCTTGATAAACACCCCAc < 1:1571115/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:380435/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:572690/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:552803/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:519413/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:497436/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:495914/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:453386/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:388671/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:573500/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:358122/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:33961/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:319372/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:312192/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:306211/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1035492/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:284865/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:280402/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:787614/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:997856/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:944334/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:941793/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:936144/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:927614/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:865791/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:819974/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:790768/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:290922/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:733953/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:733151/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:690667/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:667848/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:637206/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:620203/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:60700/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:597243/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1257472/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1503226/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1496477/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1460199/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1435834/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:142796/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1392261/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1338676/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1258267/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:144602/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1239056/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1234863/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:117696/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:115402/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1146465/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1084857/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1041845/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1534105/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:240926/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:226598/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:209098/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:193482/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1871/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:161920/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1602911/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1599554/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1594574/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1578866/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:155863/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1553636/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1514187/60‑1 (MQ=255)
tCACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGAAAAACACCCCAc < 1:1081521/60‑1 (MQ=255)
cACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:795276/59‑1 (MQ=255)
cACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:277289/59‑1 (MQ=255)
cACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:840610/59‑1 (MQ=255)
cACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:929976/59‑1 (MQ=255)
cACGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:258788/59‑1 (MQ=255)
aCGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:857493/58‑1 (MQ=255)
cGCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:542413/57‑1 (MQ=255)
gCCACCAAAGGCGACTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:517114/56‑1 (MQ=255)
cgaCTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:1103337/43‑1 (MQ=39)
cTCGCGCATCGCTGGCACAATAACCATTGATAAACACCCCAc < 1:861765/42‑1 (MQ=255)
|
TTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCAC > W3110S.gb/1615114‑1615174
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
