Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,738,366 |
T→G |
G213G (GGA→GGC) |
ydhP ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,738,366 | 0 | T | G | 99.5%
| 541.3
/ ‑3.9
| 187 | coding (639/1170 nt) | ydhP | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (0/186); minor base . (0/1); total (0/187) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 |
Only 100 of 187 total aligned reads displayed.
TTGCACCAGCTCCCAGTACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGC > W3110S.gb/1738356‑1738419
|
ttGCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCT‑‑GGACGCATTAATACCGc < 1:819870/62‑1 (MQ=37)
tGCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCg < 1:1620924/62‑1 (MQ=255)
tGCACCAGC‑GCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:295638/62‑1 (MQ=38)
gCACCAGCGCCCGGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:8974/62‑1 (MQ=38)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCGCCTGCGGACGCATTAATACCGc < 1:1241545/62‑1 (MQ=38)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATAcccc < 1:1066955/62‑3 (MQ=39)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:541939/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:493322/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:510154/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:527438/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:535323/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:590770/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:554730/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:56917/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:572193/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:584589/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:645537/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:484644/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:481312/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:474853/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:463917/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:456018/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:433345/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:425061/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:413859/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:406472/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:397006/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:387205/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:807457/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:985381/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:968898/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:955961/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:948718/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:93358/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:924363/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:89767/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:888383/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:847730/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:843344/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:834123/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:614650/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:784656/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:769489/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:745775/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:702536/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:690656/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:677877/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:662541/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:655910/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:652756/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:346636/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:636283/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1214719/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:369458/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1401479/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1400238/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1386005/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1357329/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1342994/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1297591/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1280449/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1264415/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1257004/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1237875/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1407955/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:119394/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1178698/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1149153/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1113489/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1112350/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1087737/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1085010/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1061722/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1054815/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:101194/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1572157/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1004377/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:317243/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:278429/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:278104/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:234743/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1757/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1637574/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1610096/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1595846/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1591883/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1588119/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1431335/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1537076/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1518642/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1517552/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1493118/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1476270/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1460499/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1443365/62‑1 (MQ=255)
gCACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1440585/62‑1 (MQ=255)
gCACAAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:203662/62‑1 (MQ=38)
cACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1484458/61‑1 (MQ=255)
cACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:1374980/61‑1 (MQ=255)
cACCAGCGCCCAGCACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGc < 1:685975/61‑1 (MQ=255)
|
TTGCACCAGCTCCCAGTACCGTCGTCAGCAATGCAGACAGCACCTGCGGACGCATTAATACCGC > W3110S.gb/1738356‑1738419
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
