Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,973,179 |
G→T |
A409A (GCC→GCA) |
tar ← |
methyl‑accepting chemotaxis protein II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,973,179 | 0 | G | T | 100.0%
| 318.5
/ NA
| 119 | A409A (GCC→GCA) | tar | methyl‑accepting chemotaxis protein II |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (119/0); total (119/0) |
Only 100 of 119 total aligned reads displayed.
TTTGCCGCCTGGGCGCTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACGG > W3110S.gb/1973168‑1973222
|
tttGCCGCCTGTGCACTGCGACTGGCAAGCTTACGCACTTCACCCGCCACCACg > 1:228153/1‑54 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCa > 1:982356/1‑42 (MQ=21)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGc > 1:1352724/1‑47 (MQ=21)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:375347/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:573412/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:571701/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:571151/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:527816/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:51753/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:511398/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:50962/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:489483/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:475893/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:452781/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:434002/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:586392/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:335110/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:324842/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:304001/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:295219/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:293316/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:276571/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:25355/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:221400/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:10139/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:785236/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:982869/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:981718/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:938366/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:921018/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:894844/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:877902/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:864880/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:860555/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:829455/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:810573/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:785805/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:585723/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:78491/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:761771/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:749873/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:724258/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:70284/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:690128/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:687431/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:671177/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:659935/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:587731/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:200431/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1135087/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1270448/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1267425/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1265256/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1245131/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1225709/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1198822/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1197039/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1193063/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1185586/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1171038/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1170507/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:116780/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1305161/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1133166/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1111230/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1096948/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1089140/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1076639/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1074132/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1044149/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1035467/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:102740/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1026691/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1022711/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1447360/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1638675/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:160743/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1540790/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:15380/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1526779/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1526621/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1502202/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1486758/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1460760/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1454403/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1448306/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:196032/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:144167/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1438125/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1436134/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1431310/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1392575/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1363019/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1359664/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1354987/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1323222/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACgg > 1:1313335/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGGCAAGACTACGCACTTCACCCGCCACCACgg > 1:857342/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCGACTGCCAAGATTACGCACTTCACCCGCCACCACgg > 1:477170/1‑55 (MQ=25)
tttGCCGCCTGTGCACTGCCACTGGCAAGATTACGCACTTCACCCg > 1:456451/1‑46 (MQ=21)
|
TTTGCCGCCTGGGCGCTGCGACTGGCAAGATTACGCACTTCACCCGCCACCACGG > W3110S.gb/1973168‑1973222
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
