Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,384,411 |
C→T |
Q301Q (CAG→CAA) |
menF ← |
isochorismate synthase 2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,384,411 | 0 | C | T | 100.0%
| 508.1
/ NA
| 176 | Q301Q (CAG→CAA) | menF | isochorismate synthase 2 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (176/0); total (176/0) |
Only 100 of 176 total aligned reads displayed.
ACGCAGTACCTGCGGCGGTAAAACATCCAGCGTCTGGGTATCGGCCTGTAATCGTTGACAGA > W3110S.gb/2384378‑2384439
|
gcgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1472839/2‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCTGCCTGCAATCGTTGGCAGa > 1:742022/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGGCTGCAATCGTTGGCAGa > 1:852960/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATc > 1:521953/1‑53 (MQ=39)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCg > 1:1449526/1‑54 (MQ=39)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGt > 1:1466174/1‑55 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAg > 1:951461/1‑61 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAg > 1:514919/1‑61 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:474896/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:55555/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:545674/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:534922/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:497451/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:494872/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:490009/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:480884/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:580953/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:471421/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:456632/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:450029/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:4239/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:420345/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:418970/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:407395/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:392833/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:375463/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:344558/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:335056/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:831051/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:957643/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:932246/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:915066/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:911771/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:905152/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:899576/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:88523/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:882243/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:877626/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:866284/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:833456/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:559931/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:772812/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:765674/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:762939/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:74168/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:731526/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:726564/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:701451/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:631581/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:610195/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:597557/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:327639/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:120238/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:328291/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1351538/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1330270/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1323063/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1305626/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1284078/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1267888/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1265705/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1244614/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1231698/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1223928/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1409860/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1173279/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1170978/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:116339/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:112159/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1107675/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1098745/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1081605/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1069243/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1067066/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:103202/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1017364/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1633518/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1015262/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:317508/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:270618/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:259311/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:243635/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:231507/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:216583/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:204963/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:19217/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1645431/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1420122/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1620264/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1617551/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1587344/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1558684/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1500991/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:148238/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1445272/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1441195/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1429668/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1424481/1‑62 (MQ=255)
acgcagTACCTGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGACTGCAATCGTTGGCAGa > 1:194174/1‑62 (MQ=255)
acgcagTACATGCGGCGGTAAAACATCCAGCGTTTGGGTATCGGCCTGCAATCGTTGGCAGa > 1:1369991/1‑62 (MQ=255)
|
ACGCAGTACCTGCGGCGGTAAAACATCCAGCGTCTGGGTATCGGCCTGTAATCGTTGACAGA > W3110S.gb/2384378‑2384439
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
