Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I3 R2 489 0.0 1652083 58.3% 963164 55.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 2,913,567 G→A G30G (GGC→GGT)  rumA ← 23S rRNA (uracil‑5)‑methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb2,913,5670GA100.0% 652.2 / NA 229G30G (GGC→GGT) rumA23S rRNA (uracil‑5)‑methyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (229/0);  total (229/0)

Only 100 of 229 total aligned reads displayed.

CGTTTTCCTGCGGCAATAATCCGGGGATAAATAGCGTTTTGCCGTTATGTCGCGCCACGCCC  >  W3110S.gb/2913509‑2913570
                                                          |   
cgTTTTCCTGCGGCAATAATCCGGGGATATATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:98831/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAccc  >  1:1477743/1‑62 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:583439/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:194302/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:576418/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:549793/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:539884/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:534196/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:526060/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:490333/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:472770/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:450809/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:441000/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:431161/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:390437/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:379714/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:351749/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:33404/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:318500/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:314683/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:304408/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:280956/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:253658/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:233713/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:222059/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:173105/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:778075/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:981154/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:955928/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:922936/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:907725/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:897137/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:865197/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:852891/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:841407/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:815801/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:797276/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:783696/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:596013/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:767131/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:759039/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:747481/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:72577/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:687233/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:678114/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:657992/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:645787/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:627519/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:622437/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:620992/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1122684/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1262355/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1251716/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1250022/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1239085/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1235948/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1226864/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1208941/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1190332/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1162653/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1149853/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1133432/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:112899/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:163843/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1105376/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1091348/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1080365/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1074653/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1069111/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1065459/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1055060/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1047539/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1037441/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1022926/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1021390/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1288149/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1002657/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:160973/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1597998/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1589498/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1585337/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1544770/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1536408/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1532368/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1506061/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1483948/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1444378/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:142047/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1404915/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1402801/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1394325/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1388671/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1383764/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1374290/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1333164/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1323733/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1317216/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:1276729/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCCGGGGATAAATAATGTTTAGCCGTTATGTCGCGCCACAcc   >  1:1008328/1‑61 (MQ=255)
cgTTTTCCTGCGGCAATAATCAGGGGATAAATAATGTTTTGCCGTTATGTCGCGCCACAcc   >  1:511871/1‑61 (MQ=255)
                                                          |   
CGTTTTCCTGCGGCAATAATCCGGGGATAAATAGCGTTTTGCCGTTATGTCGCGCCACGCCC  >  W3110S.gb/2913509‑2913570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A