Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,168,189 |
A→G |
T48T (ACT→ACC) |
ygiW ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,168,189 | 0 | A | G | 100.0%
| 297.0
/ NA
| 103 | T48T (ACT→ACC) | ygiW | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/103); total (0/103) |
Only 100 of 103 total aligned reads displayed.
CACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCG > W3110S.gb/3168164‑3168225
|
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTTCGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:333552/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTGCGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:354426/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTTGGCCCCTGGAATCCTCCg < 1:526760/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAAtcctcca < 1:1191890/62‑2 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:308249/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:441091/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:430613/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:422437/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:41765/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:412531/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:398090/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:384799/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:328510/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:462139/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:297782/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:297060/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:282155/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:269401/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:263836/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:22485/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:205345/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:202263/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1005833/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:192477/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:186729/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:620225/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:979365/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:968580/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:91854/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:865736/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:864697/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:843696/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:796374/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:762283/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:760843/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:684251/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:458023/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:619606/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:588425/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:58030/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:535658/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:526978/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:494208/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:490951/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:474829/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:472850/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:196420/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1149442/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1410893/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:138658/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:135366/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1342361/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1334151/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1333302/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1294524/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1275728/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1248492/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1223922/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1156829/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:166107/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1132277/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:112092/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1106899/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1105758/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1105349/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1072197/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1065380/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1047985/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1039002/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1033803/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1610513/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1609049/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1604075/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1604037/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1600071/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1587482/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:157507/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1562617/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1628479/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1542841/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1538943/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1534083/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1516085/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1632522/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:168394/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGCAATCCTCCg < 1:1131291/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCT‑GAATCCTCCg < 1:268135/61‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTCCCGTTCGGCCCCTGGAATCCTCCg < 1:1354872/62‑1 (MQ=255)
cACGCAGGGATTTTGCGCTTTCTACGGGCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:636653/62‑1 (MQ=255)
aCGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1625349/61‑1 (MQ=255)
aCGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1151006/61‑1 (MQ=255)
aCGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:219239/61‑1 (MQ=255)
aCGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:968905/61‑1 (MQ=255)
aCGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1446363/61‑1 (MQ=255)
aCGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1559400/61‑1 (MQ=255)
aCGCAGGGATTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:49179/61‑1 (MQ=255)
aTTTTGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:1371707/53‑1 (MQ=255)
ttGCGCTTTCTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:455284/50‑1 (MQ=255)
tCTACGGTCGTTACGCTGCCGTTCGGCCCCTTGAATCCTCCg < 1:1491569/42‑1 (MQ=38)
cTACGGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCg < 1:317334/41‑1 (MQ=255)
|
CACGCAGGGATTTTGCGCTTTCTACAGTCGTTACGCTGCCGTTCGGCCCCTGGAATCCTCCG > W3110S.gb/3168164‑3168225
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
