Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,742,233 |
T→C |
E194E (GAA→GAG) |
yieE ← |
predicted phosphopantetheinyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,742,233 | 0 | T | C | 100.0%
| 651.8
/ NA
| 220 | E194E (GAA→GAG) | yieE | predicted phosphopantetheinyl transferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/220); total (0/220) |
Only 100 of 220 total aligned reads displayed.
GACACTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCTTCCGCGTC > W3110S.gb/3742179‑3742241
|
gACACTGAGCTTTTCAATCGTGGGCGTGACC‑CCACGGACCACACCAGCACGTCCTCCGCGTc < 1:275742/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCTTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:347756/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGAGCACACCAGCACGTCCTCCGCGTc < 1:518407/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:416032/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:595226/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:591803/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:580691/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:574486/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:566214/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:531286/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:492840/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:489614/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:457529/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:44586/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:424463/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:603612/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:372651/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:334524/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:324198/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:311174/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:27306/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:250244/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:229689/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1008736/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:199078/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:803858/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:994587/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:983255/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:979333/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:957478/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:944188/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:935421/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:897345/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:883955/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:865280/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:860204/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:820852/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:213291/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:789207/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:787079/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:762394/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:756639/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:69638/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:693062/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:684302/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:661201/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:640164/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:628716/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:605780/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1194450/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:188736/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1347689/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1340410/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1331903/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1292629/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1277712/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1271630/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1252101/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1235226/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1216483/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1204456/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1199146/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1368951/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1168077/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1166326/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:111790/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1113369/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1101797/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1084157/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1068308/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1060321/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1046134/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1036838/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1017168/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1514973/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:165150/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1644361/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1630516/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1609568/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1605688/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1583703/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1578860/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1576657/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1560059/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1532780/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1528416/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1369791/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1506093/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1482367/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1479387/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1472317/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1465320/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:145990/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1416320/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1397669/62‑1 (MQ=255)
acacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1383381/62‑1 (MQ=255)
cacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:342980/61‑1 (MQ=255)
cacTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:1352436/61‑1 (MQ=255)
tGAGCTTTTCAATCGTGGGCGTGACCGCCACTGACCACACCAGCACGTCCTCCGCGTc < 1:501181/58‑1 (MQ=255)
cGTGACCGCCACGGACCACACCAGCACGTCCTCCGCGTc < 1:646970/39‑1 (MQ=255)
|
GACACTGAGCTTTTCAATCGTGGGCGTGACCGCCACGGACCACACCAGCACGTCTTCCGCGTC > W3110S.gb/3742179‑3742241
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
