Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
58 |
121.6 |
3649812 |
78.1% |
2850503 |
56.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,815,306 |
A→G |
*167R (TGA→CGA) |
recX ← |
regulatory protein for RecA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,815,306 | 0 | A | G | 100.0%
| 74.5
/ NA
| 21 | *167R (TGA→CGA) | recX | regulatory protein for RecA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (21/0); total (21/0) |
AAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGC > minE/1815262‑1815322
|
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCTGCAAAATTTCGc > 1:3275234/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2732276/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:884352/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:765681/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:723685/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:3506676/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:3449062/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:3291346/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2948902/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2898280/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2805158/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:1137106/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2284823/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2282588/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2248913/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2157114/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:2078514/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:1995493/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:16882/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:1531805/1‑61 (MQ=255)
aagataagTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCGGTCGGCAAAATTTCGc > 1:1376307/1‑61 (MQ=255)
|
AAGATAAGTTTTCTTGACTGGGAAGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGC > minE/1815262‑1815322
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
