Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
58 |
121.6 |
3649812 |
78.1% |
2850503 |
56.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,524,590 |
G→A |
P70L (CCA→CTA) |
yicC ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,524,590 | 0 | G | A | 100.0%
| 304.0
/ NA
| 85 | P70L (CCA→CTA) | yicC | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/73); total (12/73) |
GCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTGGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAG > minE/2524537‑2524630
|
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCTCGCTAACATCTAGCTCATAg < 1:1490334/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:3173029/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:181103/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:1896586/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:1913709/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:1918950/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:19191/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:2288005/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:2609003/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:269951/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:1022944/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:3243974/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:342464/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:3424819/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:3618129/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:514223/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:584539/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:690640/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:784082/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:827522/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:102600/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:1118923/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:142544/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:1324365/62‑1 (MQ=255)
gCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTAGCTCATAg < 1:1339034/62‑1 (MQ=255)
cTCACGTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:34488/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGTGCAGGGTACAt < 1:759415/43‑1 (MQ=38)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACaa < 1:2775903/43‑2 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2955166/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3121418/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1178676/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3257535/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3338259/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3380241/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1624643/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3422922/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1151980/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2872449/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1151083/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3463732/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3476829/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:363712/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3643824/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:427670/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:463917/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1116218/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:584175/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:60774/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:662792/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:738742/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:776086/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2811882/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1612273/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1721325/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1726256/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1585992/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1874964/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1550023/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:154151/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1494937/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1972014/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:140408/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2382781/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2867730/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2488763/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2549416/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2588122/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:1376550/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2616464/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2421715/43‑1 (MQ=255)
cTCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:2678437/43‑1 (MQ=255)
tCACCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACAt < 1:3600011/42‑1 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTAc > 1:1107759/1‑38 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:1838700/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:1019477/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:1674615/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:1682929/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:2719484/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:1063288/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:673895/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:3145124/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:1936474/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:2015464/1‑60 (MQ=255)
aCCTTGCGCGCTAACATCTAGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAg > 1:2273269/1‑60 (MQ=255)
gcgcgcGAACATCTAGCTCATAGCGCAGGGTACAt < 1:2459085/35‑1 (MQ=255)
|
GCTGTTTAGCCAGTTTTTCGTTGAGGATCAGCTCACCTTGCGCGCTAACATCTGGCTCATAGCGCAGGGTACATTCCACTTTACCGCGCGTCAG > minE/2524537‑2524630
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
