Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
58 |
121.6 |
3649812 |
78.1% |
2850503 |
56.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,719,431 |
Δ1 bp |
intergenic (+20/+47) |
argD → / ← yhfK |
bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase/conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,719,428 | 0 | A | . | 99.4%
| 688.7
/ ‑1.6
| 154 | intergenic (+17/+50) | argD/yhfK | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase/conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (0/153); minor base C (0/1); total (0/154) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 154 total aligned reads displayed.
CCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCG > minE/2719381‑2719444
|
ccACGCGGTGGCGAAGGTGTTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2557920/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3442751/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2019039/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2023228/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2048050/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2104554/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:501864/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:379072/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2258380/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2287610/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2320448/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2339410/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2374960/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2596026/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3480365/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2642822/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1026252/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2689720/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3402236/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2789990/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2879631/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2893324/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2934492/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2960628/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3282993/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3281134/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3122573/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3124059/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3153223/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3159158/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3209945/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:828032/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1268503/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1295869/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1328173/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:134671/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1346837/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1454623/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1463006/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:776083/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1512943/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1513539/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:823794/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:152223/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1536786/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1799505/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:548033/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:193923/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1919572/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1809454/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:684590/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1673452/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1664502/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1651345/61‑1 (MQ=255)
ccACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCA‑GCCAAAGATGTCGGATg < 1:3317865/61‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCTTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1690018/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:325373/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:782561/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:904115/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:916208/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:323442/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:949297/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:3370288/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:762219/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:3577486/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:739359/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:3614602/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:523366/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:540484/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:622412/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:3141137/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1044674/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1101789/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1106582/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1470019/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1519556/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1591736/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1975530/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:197651/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:205967/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2133245/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2157831/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:320950/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:3137230/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2649450/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2700870/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2361365/62‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:2623602/60‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1721064/60‑1 (MQ=255)
cACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:307586/60‑1 (MQ=255)
aCGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2753633/61‑1 (MQ=255)
aCGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1140709/61‑1 (MQ=255)
aCGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:1265905/61‑1 (MQ=255)
aCGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2854956/61‑1 (MQ=255)
aCGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:659782/61‑1 (MQ=255)
aCGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:532987/61‑1 (MQ=255)
ggTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:1168240/55‑1 (MQ=255)
gTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2435754/56‑1 (MQ=255)
gTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATg < 1:3079021/54‑1 (MQ=255)
cGTAAATACGAAGCATCAGGC‑AAAGATGTCGGATgcg < 1:2054638/37‑1 (MQ=38)
|
CCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCG > minE/2719381‑2719444
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
