Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R1
|
58 |
121.6 |
3649812 |
78.1% |
2850503 |
56.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,942,498 |
T→C |
Q744R (CAG→CGG) |
fecA ← |
ferric citrate outer membrane transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,942,498 | 0 | T | C | 100.0%
| 261.9
/ NA
| 69 | Q744R (CAG→CGG) | fecA | ferric citrate outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/69); total (0/69) |
CTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCTGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGCC > minE/2942448‑2942553
|
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATTAAGTAGTCCCGGTCGAAGATg < 1:1821197/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3090971/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2656123/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2785899/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2785948/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:282352/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2840288/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2842814/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:108082/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:293706/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2961086/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2965445/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2986720/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3002929/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3064015/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2859809/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3110016/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3480956/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3481509/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3520137/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3584628/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3589707/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:3631004/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:400015/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:501180/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:600329/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:743461/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:835879/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2586958/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:1847781/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:186719/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:1758772/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:1328296/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:1605864/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2096482/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2170043/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2338760/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2354767/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2418167/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2496180/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:2551267/62‑1 (MQ=255)
cTGCATAGATGCCTTTGTTGTT‑TCGTCATAAGAGCGGATGAAGTAGTCCCGGTCGAAGATg < 1:55126/61‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTGAGATCTGCCATCTGCGGGcc < 1:1315115/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:1234981/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:433051/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3628445/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:542993/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:1301546/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:1268296/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:744964/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:77358/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:801020/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:802976/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:2593847/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3602839/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3596311/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:1648153/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:172595/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3484821/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:1829442/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3475172/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3352286/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3186308/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:3153047/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:1943885/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:199609/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:2061538/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:2095711/62‑1 (MQ=255)
tagtCCCGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGcc < 1:2123018/62‑1 (MQ=255)
|
CTGCATAGATGCCTTTGTTGTTGTCGTCATAAGAGCGGATGAAGTAGTCCTGGTCGAAGATGTTTTTCACACCGAATGCCAGGTTCAGATCTGCCATCTGCGGGCC > minE/2942448‑2942553
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
