Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F17 I0 R1
|
87 |
56.5 |
4283937 |
98.6% |
4223961 |
62.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
3,261,134 |
Δ1,199 bp |
100% |
|
insH–[tdcD] |
insH, [tdcD] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
3261134–3262332 |
3262332 |
1–1199 |
58 [0] |
[0] 56 |
insH–[tdcD] |
insH,[tdcD] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 3261133 | 0 (0.000) | 35 (0.820) |
26/94 |
NT |
100% |
intergenic (‑59/‑69) |
tdcE/insH |
pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | W3110S.gb |
3262333 = |
0 (0.000) | coding (1183/1296 nt) |
tdcD |
propionate kinase/acetate kinase C, anaerobic |
GATK/CNVnator alignment
N/A
