mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 70,434 | C→T | 47.8% | N16N (AAC→AAT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,581 | C→T | 38.7% | V65V (GTC→GTT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 70,740 | T→G | 45.5% | G118G (GGT→GGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,079 | C→T | 47.9% | R231R (CGC→CGT) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,082 | T→C | 46.3% | I232I (ATT→ATC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,085 | T→C | 42.7% | S233S (AGT→AGC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,109 | T→C | 45.9% | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,175 | A→G | 42.2% | R263R (CGA→CGG) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 71,214 | T→C | 51.7% | F276F (TTT→TTC) | araC → | DNA‑binding transcriptional dual regulator |
| RA | 155,463 | A→T | 100% | *247K (TAA→AAA) | ecpD ← | predicted periplasmic pilin chaperone |
| RA | 236,101 | A→C | 53.5% | D12A (GAT→GCT) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 236,107 | A→C | 52.7% | E14A (GAA→GCA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 258,840 | A→G | 6.7% | V162A (GTT→GCT) | phoE ← | outer membrane phosphoporin protein E |
| RA | 267,502 | G→T | 7.7% | P228H (CCT→CAT) | ykfA ← | predicted GTP‑binding protein |
| RA | 345,099 | C→T | 9.6% | A155T (GCC→ACC) | yahN ← | neutral amino‑acid efflux system |
| RA | 349,140 | C→T | 11.1% | intergenic (+344/‑96) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 429,850 | T→C | 12.8% | Y8H (TAT→CAT) | yajD → | conserved hypothetical protein |
| RA | 478,343 | C→T | 8.3% | A45T (GCT→ACT) | ylaC ← | predicted inner membrane protein |
| RA | 547,694 | A→G | 100% | pseudogene (114/261 nt) pseudogene (114/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 547,831:1 | +G | 100% | pseudogene (251/261 nt) pseudogene (251/1259 nt) |
ylbE → ylbE → |
ECK0512:JW0507:b4507; hypothetical protein, N‑ter fragment ECK0512:JW0508+JW0507:b4572; hypothetical protein |
| RA | 556,858 | A→T | 100% | L36Q (CTG→CAG) | folD ← | bifunctional 5,10‑methylene‑tetrahydrofolate dehydrogenase and 5,10‑methylene‑tetrahydrofolate cyclohydrolase |
| RA | 647,863 | A→G | 9.1% | M311T (ATG→ACG) | citF ← | citrate lyase, citrate‑ACP transferase (alpha) subunit |
| MC JC | 654,214 | Δ1,199 bp | 100% | [dcuC]–[dcuC] | [dcuC], insH, [dcuC] | |
| RA | 1,008,134 | C→T | 15.1% | intergenic (‑112/‑132) | ycbX ← / → ycbY | predicted 2Fe‑2S cluster‑containing protein/predicted methyltransferase |
| RA | 1,036,407 | A→G | 10.2% | E72E (GAA→GAG) | hyaD → | protein involved in processing of HyaA and HyaB proteins |
| RA | 1,084,947 | A→G | 16.9% | K384E (AAA→GAA) | ycdB → | conserved hypothetical protein |
| RA | 1,093,686 | T→C | 100% | V130A (GTA→GCA) | ycdT → | predicted diguanylate cyclase |
| RA | 1,115,786 | T→C | 8.1% | intergenic (‑28/+55) | msyB ← / ← mdtG | hypothetical protein/predicted drug efflux system |
| RA | 1,224,919 | G→A | 9.4% | intergenic (‑423/‑123) | ymgG ← / → ymgH | hypothetical protein/hypothetical protein |
| RA | 1,255,918 | C→T | 10.9% | G538S (GGC→AGC) | ycgV ← | predicted adhesin |
| RA | 1,295,635 | T→C | 7.9% | Y178H (TAC→CAC) | tdk → | thymidine kinase/deoxyuridine kinase |
| MC JC | 1,301,041 | Δ1,336 bp | 100% | insC–insD | insC, insD | |
| RA | 1,303,631 | C→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,303,633 | G→T | 100% | Q246Y (CAG→TAT) | oppA → | oligopeptide transporter subunit |
| RA | 1,516,711 | C→T | 17.2% | A79V (GCG→GTG) | ydcV → | predicted spermidine/putrescine transporter subunit |
| RA | 1,819,760 | G→T | 10.8% | A152E (GCG→GAG) | chbF ← | cryptic phospho‑beta‑glucosidase, NAD(P)‑binding |
| RA | 1,872,347 | A→G | 7.7% | K83K (AAA→AAG) | yeaI → | predicted diguanylate cyclase |
| RA | 1,989,353 | T→A | 6.3% | S98T (TCT→ACT) | yecI → | predicted ferritin‑like protein |
| RA | 1,989,358 | T→A | 5.9% | S99R (AGT→AGA) | yecI → | predicted ferritin‑like protein |
| RA | 2,170,757 | T→C | 8.0% | intergenic (‑314/‑92) | yegR ← / → yegS | hypothetical protein/conserved hypothetical protein |
| MC JC | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| MC JC | 2,320,795 | Δ1,336 bp | 100% | insD–[rcsC] | insD, insC, [rcsC] | |
| RA | 2,809,581 | G→A | 54.7% | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator |
| RA | 2,855,731 | G→T | 23.3% | intergenic (‑269/‑18) | ygbA ← / → mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| RA | 2,855,732 | G→A | 23.3% | intergenic (‑270/‑17) | ygbA ← / → mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| RA | 2,866,110 | T→A | 100% | intergenic (‑20/+160) | rpoS ← / ← nlpD | RNA polymerase, sigma S (sigma 38) factor/predicted outer membrane lipoprotein |
| RA | 3,001,511 | T→C | 5.5% | I81T (ATA→ACA) | xdhB → | xanthine dehydrogenase, FAD‑binding subunit |
| RA | 3,139,938 | C→T | 6.4% | R2H (CGT→CAT) | hybD ← | predicted maturation element for hydrogenase 2 |
| RA | 3,161,757 | G→A | 8.5% | T127T (ACC→ACT) | plsC ← | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase |
| MC JC | 3,261,134 | Δ1,199 bp | 100% | insH–[tdcD] | insH, [tdcD] | |
| RA | 3,294,438 | T→C | 11.9% | L395S (TTG→TCG) | yraM → | conserved hypothetical protein |
| RA | 3,306,434 | G→A | 9.6% | L428L (CTG→TTG) | deaD ← | ATP‑dependent RNA helicase |
| RA | 3,332,615 | T→A | 10.2% | intergenic (‑25/+102) | yhbE ← / ← rpmA | conserved inner membrane protein/50S ribosomal subunit protein L27 |
| RA | 3,459,280 | T→C | 10.2% | E15G (GAA→GGA) | secE ← | preprotein translocase membrane subunit |
| RA | 3,497,165 | G→A | 10.8% | A65T (GCG→ACG) | fsaB → | fructose‑6‑phosphate aldolase 2 |
| RA | 3,516,285 | T→C | 6.9% | intergenic (+20/‑47) | hslU → / → menA | molecular chaperone and ATPase component of HslUV protease/1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase |
| RA | 3,639,730 | T→C | 10.6% | K222R (AAA→AGA) | xerC ← | site‑specific tyrosine recombinase |
| RA | 3,727,747 | T→C | 11.9% | V168V (GTT→GTC) | pstA → | phosphate transporter subunit |
| RA | 3,739,327 | C→T | 10.5% | V195I (GTT→ATT) | yieH ← | predicted hydrolase |
| MC JC | 3,742,938 | Δ1,336 bp | 100% | insD–insC | insD, insC | |
| MC JC | 3,750,593 | Δ1,199 bp | 100% | insH | insH | |
| RA | 3,824,280 | T→C | 100% | pseudogene (413/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,326 | T→C | 100% | pseudogene (459/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,362 | A→T | 100% | pseudogene (495/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,368 | G→A | 100% | pseudogene (501/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,374 | C→T | 100% | pseudogene (507/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,380 | 2 bp→AA | 100% | pseudogene (513‑514/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,410 | T→A | 100% | pseudogene (543/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,514 | T→C | 100% | pseudogene (647/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,524 | T→G | 100% | pseudogene (657/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,824,533:1 | +G | 100% | pseudogene (666/687 nt) | rph → | ECK3633:JW3618:b3643; ribonuclease PH |
| RA | 3,832,784 | T→C | 7.3% | C156R (TGC→CGC) | rfaQ → | lipopolysaccharide core biosynthesis protein |
| RA | 3,836,867 | A→G | 8.7% | K206K (AAA→AAG) | rfaB → | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| RA | 3,886,994 | G→A | 5.5% | S226N (AGC→AAC) | yiaV → | membrane fusion protein (MFP) component of efflux pump, signal anchor |
| RA | 3,915,028 | C→T | 6.7% | intergenic (+24/‑71) | ysaB → / → glyQ | hypothetical protein/glycine tRNA synthetase, alpha subunit |
| RA | 3,915,241 | A→G | 15.0% | E48G (GAG→GGG) | glyQ → | glycine tRNA synthetase, alpha subunit |
| RA | 4,012,376 | G→A | 12.7% | A500T (GCC→ACC) | rbbA → | fused ribosome‑associated ATPases |
| RA | 4,164,007 | C→A | 7.6% | T10T (ACC→ACA) | yheO → | predicted DNA‑binding transcriptional regulator |
| RA | 4,218,735 | G→T | 8.5% | W288C (TGG→TGT) | metA → | homoserine transsuccinylase |
| MC JC | 4,310,365 | Δ1,199 bp | 100% | insH–[alsK] | insH, [alsK] | |
| RA | 4,350,232 | G→A | 8.3% | R3C (CGC→TGC) | yjdF ← | conserved inner membrane protein |
| RA | 4,371,273 | Δ2 bp | 100% | intergenic (‑6/+299) | dcuA ← / ← aspA | C4‑dicarboxylate antiporter/aspartate ammonia‑lyase |
| RA | 4,477,260 | G→A | 12.1% | intergenic (‑45/+236) | pyrL ← / ← yjgH | pyrBI operon leader peptide/predicted mRNA endoribonuclease |
| RA | 4,544,435 | A→G | 10.8% | intergenic (‑252/‑1204) | yjhA ← / → fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| RA | 4,563,589 | T→A | 100% | K207M (AAG→ATG) | iadA ← | isoaspartyl dipeptidase |
| RA | 4,580,803 | C→T | 16.7% | pseudogene (1987/2721 nt) | yjiV → | ECK4334:JW5954:b4486; conserved hypothetical protein |
| RA | 4,606,089 | G→A | 11.1% | N37N (AAC→AAT) | dnaT ← | DNA biosynthesis protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 573850–575008 | 575999 | 992–2150 | 12 [10] | [0] 113 | insH–[nmpC] | insH,[nmpC] |
| * | * | ÷ | W3110S.gb | 1328297 | 1328351 | 55 | 11 [9] | [10] 13 | yciQ | predicted inner membrane protein |
| * | * | ÷ | W3110S.gb | 1828078 | 1828135 | 58 | 11 [10] | [8] 11 | astE | succinylglutamate desuccinylase |
| * | * | ÷ | W3110S.gb | 2041772 | 2041817 | 46 | 12 [8] | [10] 11 | yedY | predicted reductase |
| * | * | ÷ | W3110S.gb | 2569105 | 2569138 | 34 | 13 [10] | [9] 11 | eutE | predicted aldehyde dehydrogenase, ethanolamine utilization protein |
| * | * | ÷ | W3110S.gb | 2827382 | 2827428 | 47 | 11 [10] | [10] 12 | gutM | DNA‑binding transcriptional activator |
| * | * | ÷ | W3110S.gb | 4213629–4215889 | 4216717–4215891 | 3–3089 | 11 [8] | [10] 11 | rrlE–[rrfE] | rrlE,[rrfE] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 70061 = | 47 (1.020) | 39 (1.080) +CGCGTACAACT |
27/80 | NT | 45.0% | intergenic (‑13/‑326) | araB/araC | L‑ribulokinase/DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 236044 = | 75 (1.620) | intergenic (‑42/‑23) | rnhA/dnaQ | ribonuclease HI, degrades RNA of DNA‑RNA hybrids/DNA polymerase III epsilon subunit | |||||
| * | ? | W3110S.gb | = 71265 | 45 (0.970) | 12 (0.360) +AGGGTCCCTAAGTC |
10/74 | NT | 36.9% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 12 (0.260) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
| * | ? | W3110S.gb | = 236798 | 29 (0.630) | 10 (0.250) +TTTAAT |
7/90 | NT | 22.3% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | = 3142784 | 50 (1.080) | coding (37/1179 nt) | hybB | predicted hydrogenase 2 cytochrome b type component | |||||
| * | ? | W3110S.gb | = 274373 | NA (NA) | 63 (1.360) | 35/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
| ? | W3110S.gb | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin | |||||
| * | ? | W3110S.gb | = 314744 | NA (NA) | 6 (0.150) | 4/88 | NT | NA | coding (239/309 nt) | insE | IS3 element protein |
| ? | W3110S.gb | = 314761 | NA (NA) | coding (256/309 nt) | insE | IS3 element protein | |||||
| * | ? | W3110S.gb | = 314796 | NA (NA) | 3 (0.080) | 3/82 | NT | NA | coding (291/309 nt) | insE | IS3 element protein |
| ? | W3110S.gb | = 314812 | NA (NA) | coding (307/309 nt) coding (2/867 nt) |
insE insF |
IS3 element protein IS3 element protein InsF |
|||||
| * | ? | W3110S.gb | = 315707 | NA (NA) | 33 (0.710) | 26/102 | NT | 100% | coding (654/687 nt) | ykgA | predicted DNA‑binding transcriptional regulator |
| ? | W3110S.gb | 576911 = | 0 (0.000) | coding (76/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 43 (0.930) | 30/102 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
| * | ? | W3110S.gb | 713380 = | 34 (0.730) | 27 (0.630) | 23/94 | NT | 46.8% | intergenic (‑156/‑29) | ybfF/seqA | conserved hypothetical protein/regulatory protein for replication initiation |
| ? | W3110S.gb | = 4125340 | 30 (0.700) | coding (836/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | = 713954 | 66 (1.430) | 40 (0.860) | 26/102 | NT | 37.6% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 67 (1.450) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
| * | ? | W3110S.gb | 1098035 = | 33 (0.710) | 3 (0.070) | 3/90 | NT | 8.6% | intergenic (‑142/‑92) | serX/ycdW | tRNA‑Ser/2‑ketoacid reductase |
| ? | W3110S.gb | 1098067 = | 35 (0.860) | intergenic (‑174/‑60) | serX/ycdW | tRNA‑Ser/2‑ketoacid reductase | |||||
| * | ? | W3110S.gb | 1209367 = | 22 (0.480) | 25 (0.790) | 21/70 | NT | 66.7% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | 1211196 = | 10 (0.320) | pseudogene (37/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1209382 | 19 (0.410) | 22 (0.700) | 18/70 | NT | 65.8% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 10 (0.320) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
| * | ? | W3110S.gb | = 1773418 | 54 (1.170) | 4 (0.100) | 3/90 | NT | 7.4% | coding (634/1215 nt) | ydiM | predicted transporter |
| ? | W3110S.gb | = 1773431 | 52 (1.280) | coding (647/1215 nt) | ydiM | predicted transporter | |||||
| * | ? | W3110S.gb | = 1931279 | 44 (0.950) | 3 (0.070) | 3/92 | NT | 7.2% | coding (143/660 nt) | yebE | conserved hypothetical protein |
| ? | W3110S.gb | = 1931292 | 38 (0.910) | coding (130/660 nt) | yebE | conserved hypothetical protein | |||||
| * | ? | W3110S.gb | 2018571 = | 11 (0.240) | 22 (0.510) | 19/96 | NT | 68.0% | coding (567/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | 2519723 = | NA (NA) | intergenic (+33/‑54) | nupC/insL | nucleoside (except guanosine) transporter/predicted transposase | |||||
| * | ? | W3110S.gb | = 2018583 | 3 (0.060) | 38 (0.860) | 28/98 | NT | 93.0% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 72 (1.590) | 43/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | 2172309 = | NA (NA) | 50 (1.130) | 36/98 | NT | 100% | pseudogene (1562/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | 3932930 = | 0 (0.000) | coding (219/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2173564 | NA (NA) | 107 (2.360) | 58/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | 3920278 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 42 (0.910) | 31/102 | NT | 100% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 0 (0.000) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
| * | ? | W3110S.gb | = 2412225 | NA (NA) | 71 (1.530) | 42/102 | NT | 93.4% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | W3110S.gb | = 3748807 | 5 (0.110) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | 2750405 = | 45 (0.970) | 4 (0.100) | 4/90 | NT | 9.0% | intergenic (+40/‑46) | yfjB/recN | NAD kinase/recombination and repair protein |
| ? | W3110S.gb | 2750425 = | 41 (1.010) | intergenic (+60/‑26) | yfjB/recN | NAD kinase/recombination and repair protein | |||||
| * | ? | W3110S.gb | = 2855747 | 21 (0.450) | 17 (0.370) | 11/100 | NT | 31.0% | intergenic (‑285/‑2) | ygbA/mutS | hypothetical protein/methyl‑directed mismatch repair protein |
| ? | W3110S.gb | 4124505 = | 55 (1.210) | coding (1/837 nt) | dam | DNA adenine methylase | |||||
| * | ? | W3110S.gb | 3028230 = | 64 (1.380) | 3 (0.070) | 3/94 | NT | 5.3% | coding (1358/1920 nt) | ygfT | fused predicted oxidoreductase Fe‑S subunit and nucleotide‑binding subunit |
| ? | W3110S.gb | 3028255 = | 49 (1.150) | coding (1333/1920 nt) | ygfT | fused predicted oxidoreductase Fe‑S subunit and nucleotide‑binding subunit | |||||
| * | ? | W3110S.gb | 3152775 = | 69 (1.490) | 3 (0.070) | 3/90 | NT | 5.1% | coding (557/660 nt) | yghB | conserved inner membrane protein |
| ? | W3110S.gb | 3152797 = | 52 (1.280) | coding (579/660 nt) | yghB | conserved inner membrane protein | |||||
| * | ? | W3110S.gb | = 3746912 | 0 (0.000) | 81 (1.900) | 51/94 | NT | 100% | coding (71/447 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 3748112 = | 0 (0.000) | coding (871/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
| * | ? | W3110S.gb | 3748799 = | 4 (0.090) | 51 (1.100) | 41/102 | NT | 92.7% | coding (184/984 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 4056222 = | NA (NA) | intergenic (‑564/+15) | yrhB/insB | hypothetical protein/IS1 transposase InsAB' | |||||
| * | ? | W3110S.gb | 3998498 = | 89 (1.920) | 5 (0.130) | 3/88 | NT | 6.1% | coding (1058/1470 nt) | yhiP | predicted transporter |
| ? | W3110S.gb | 3998524 = | 77 (1.930) | coding (1032/1470 nt) | yhiP | predicted transporter | |||||
| * | ? | W3110S.gb | 4547364 = | 29 (0.630) | 5 (0.130) | 4/84 | NT | 16.7% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | 4547678 = | 26 (0.690) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | W3110S.gb | = 4547372 | 29 (0.630) | 7 (0.180) | 6/84 | NT | 22.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin |
| ? | W3110S.gb | = 4547668 | 26 (0.690) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin | |||||