Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I0 R1
|
2892 |
75.3 |
5698161 |
66.1% |
3766484 |
59.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,595,752 |
A→G |
31.4% |
I282I (ATT→ATC) |
arsB ← |
arsenite/antimonite transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,595,752 | 0 | A | G | 31.4%
| 149.8
/ 98.9
| 124 | I282I (ATT→ATC) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base A (49/36); new base G (24/15); total (73/51) |
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
Only 100 of 134 total aligned reads displayed.
AGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAAT > minE/2595684‑2595821
|
aGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:5290268/1‑71 (MQ=255)
ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:639752/70‑1 (MQ=255)
ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3432388/70‑1 (MQ=255)
ccGTGAACCCTGCATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGc > 1:1502745/1‑68 (MQ=255)
cGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa < 1:2437817/69‑1 (MQ=255)
tAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAggggg > 1:2040723/1‑71 (MQ=255)
aaTCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAggggg < 1:1520409/70‑1 (MQ=255)
aaTCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAggggg < 1:5190734/70‑1 (MQ=255)
tCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:4721886/62‑1 (MQ=255)
tCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGc < 1:395201/69‑1 (MQ=255)
tCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGc < 1:553044/69‑1 (MQ=255)
cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATc > 1:5413957/1‑53 (MQ=255)
cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATc > 1:4682640/1‑53 (MQ=255)
cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATc > 1:5480005/1‑53 (MQ=255)
cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACcgcg > 1:1359999/1‑70 (MQ=255)
cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACcgcg < 1:4448805/70‑1 (MQ=255)
cATTGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACcgcg > 1:311521/1‑70 (MQ=255)
cATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAggg > 1:1810563/1‑61 (MQ=255)
cATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgcg > 1:5508891/1‑70 (MQ=255)
cATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgcg > 1:4283970/1‑70 (MQ=255)
cATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgcg > 1:3923888/1‑70 (MQ=255)
ttGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCa > 1:1753101/1‑70 (MQ=255)
tGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAg > 1:4959400/1‑70 (MQ=255)
tGCGCAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAg > 1:2682276/1‑70 (MQ=255)
tGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4774993/47‑1 (MQ=255)
tGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:5031492/47‑1 (MQ=255)
tGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1414141/47‑1 (MQ=255)
gcgcAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGAt > 1:4017813/1‑48 (MQ=255)
gcgcAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGAt > 1:495566/1‑48 (MQ=255)
gcgcAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCAtggc > 1:4981360/1‑57 (MQ=255)
gcgcAGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGa > 1:2553886/1‑71 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa > 1:5657266/1‑47 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa > 1:1478264/1‑47 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATc > 1:3537021/1‑49 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:3144657/1‑71 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:5474520/1‑71 (MQ=255)
cgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGAc < 1:3725958/71‑1 (MQ=255)
cAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACtt > 1:117966/1‑71 (MQ=255)
aGGCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACttt < 1:3163220/71‑1 (MQ=255)
ggCCATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACtt < 1:2847733/69‑1 (MQ=255)
gCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAc > 1:3936944/1‑71 (MQ=255)
ccATAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACtttt > 1:176605/1‑68 (MQ=255)
ccATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:5257019/39‑1 (MQ=255)
ccATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:5705/39‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1163787/1‑48 (MQ=255)
aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:3387899/63‑1 (MQ=255)
aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:786349/63‑1 (MQ=255)
aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:4301593/63‑1 (MQ=255)
aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGAc < 1:192852/63‑1 (MQ=255)
aTAGACCACGATGTACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTccgg < 1:906572/71‑3 (MQ=255)
aTAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3435103/43‑1 (MQ=255)
aTAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3889169/43‑1 (MQ=255)
aTAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:880141/43‑1 (MQ=255)
aTAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAg > 1:5338130/1‑46 (MQ=255)
tAAACCACCAGATATATGCCGAGCGAGAAGATGACAATCTGCCAggggg < 1:4049902/49‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1484990/36‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3462397/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTAccc < 1:299542/69‑1 (MQ=255)
aaaCCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:2089697/1‑37 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:5545859/1‑42 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:4664768/1‑42 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:1532783/1‑51 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:5229832/1‑51 (MQ=255)
accaccAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAtt < 1:719264/71‑1 (MQ=255)
ccaccaGATACATGCCGAGCGAGAAGATGACAATCTGc > 1:457586/1‑38 (MQ=255)
ccaccaGATACATGCCGAGCGAGAAGATGACAATCTGc > 1:1025090/1‑38 (MQ=255)
caccaGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa < 1:257140/71‑1 (MQ=255)
ccaGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATc < 1:2879642/71‑1 (MQ=255)
caGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:3722434/71‑1 (MQ=255)
aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAg > 1:234510/1‑50 (MQ=255)
aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg > 1:4186020/1‑70 (MQ=255)
aTACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa > 1:2385229/1‑65 (MQ=255)
aTACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCAt < 1:1668657/71‑1 (MQ=255)
tACATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAAt < 1:1845789/70‑1 (MQ=255)
aCATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGa > 1:5107652/1‑71 (MQ=255)
cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGtg > 1:4378702/1‑57 (MQ=255)
cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGtg > 1:5689818/1‑57 (MQ=255)
cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAc > 1:1060550/1‑71 (MQ=255)
cATGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAc > 1:180481/1‑71 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACttt < 1:4840439/49‑1 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACttt < 1:4282590/49‑1 (MQ=255)
gCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4394685/1‑44 (MQ=255)
cgagcgagAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGt < 1:4160915/71‑1 (MQ=255)
agcgagAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGt > 1:1319482/1‑69 (MQ=255)
agaaaaTAACGATCTGCCATGGCGCACCGCGCAGGACtt > 1:3309099/1‑39 (MQ=19)
agaaaaTAACGATCTGCCATGGCGCACCGCGCAGGACTTTTccg > 1:1081720/1‑43 (MQ=255)
gaagaTGACAATCTTCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:5332342/1‑65 (MQ=255)
gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:2317579/1‑65 (MQ=255)
gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGcga > 1:713254/1‑71 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgc > 1:1017289/1‑61 (MQ=255)
aTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGcgacga > 1:4151440/1‑70 (MQ=255)
aTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCgacgac < 1:1089310/71‑1 (MQ=255)
aTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCgacgac < 1:4033741/71‑1 (MQ=255)
tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:2307392/1‑53 (MQ=255)
tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:3044607/1‑53 (MQ=255)
gACAATCTGCCAGGTGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc > 1:2381533/1‑63 (MQ=255)
gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc > 1:1600690/1‑63 (MQ=255)
gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc > 1:2823252/1‑63 (MQ=255)
gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:1396365/1‑70 (MQ=255)
aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaaa < 1:1027949/71‑1 (MQ=255)
|
AGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAAAT > minE/2595684‑2595821
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
