Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F1 I0 R2
|
251 |
90.0 |
5200563 |
86.9% |
4519289 |
59.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,595,752 |
A→G |
7.9% |
I282I (ATT→ATC) |
arsB ← |
arsenite/antimonite transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,595,752 | 0 | A | G | 7.9%
| 331.6
/ 14.3
| 113 | I282I (ATT→ATC) | arsB | arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base A (53/51); new base G (6/3); total (59/54) |
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
Only 100 of 127 total aligned reads displayed.
AAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAA > minE/2595683‑2595819
|
aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:423141/71‑1 (MQ=255)
aaGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACaa < 1:4489240/71‑1 (MQ=255)
aGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt < 1:1029546/71‑1 (MQ=255)
tatTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTg > 1:2512693/1‑71 (MQ=255)
ttCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:470645/71‑1 (MQ=255)
tCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:3520395/70‑1 (MQ=255)
ttAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4329728/59‑1 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:1190599/1‑61 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:2252767/1‑61 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:3516885/1‑61 (MQ=255)
cGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGAGAGAAGATGACAATCTGCCa > 1:70461/1‑61 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:2963143/71‑1 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:736425/71‑1 (MQ=255)
ggCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACcgc < 1:4911483/71‑1 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3807976/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3557356/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:3783625/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:165568/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:4869153/1‑53 (MQ=255)
gCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAAt > 1:2824700/1‑53 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAgg > 1:4477667/1‑70 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4760159/1‑71 (MQ=255)
gcgcAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGa > 1:4208516/1‑71 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2543655/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1058710/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:2160791/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1837648/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:4625424/38‑1 (MQ=255)
cATAAACCACCAGATACATGCCGAGCGAGAAGATGACa < 1:1283598/38‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:4440418/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2643766/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2655549/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGcc < 1:2710958/43‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:474156/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:4839466/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3072604/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:792798/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:944278/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:2183705/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:2562069/42‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCTAGGGGGCACCGCGCAGGACTTTACCCg > 1:1994388/1‑70 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1871839/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1278359/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1640059/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:4425164/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:5053945/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1114187/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:3025739/52‑1 (MQ=255)
tAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAc < 1:1805366/52‑1 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGc < 1:3766233/40‑1 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCa > 1:1368904/1‑42 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:728254/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:3203780/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:3652204/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:1564081/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAgg > 1:2717454/1‑44 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTa < 1:489454/70‑1 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:824228/1‑71 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:3996750/1‑71 (MQ=255)
aaCCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTAt > 1:1811029/1‑71 (MQ=255)
aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg > 1:471589/1‑70 (MQ=255)
aGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGc < 1:4850556/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3809251/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:3476054/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATg < 1:4321383/71‑1 (MQ=255)
tACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGAAt < 1:196274/70‑1 (MQ=255)
aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:1059677/1‑71 (MQ=255)
aCATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:2745877/1‑71 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:4496596/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2365532/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2449413/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:565496/1‑38 (MQ=255)
aTGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCAcc > 1:2969399/1‑38 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:3760988/1‑70 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:2363060/1‑70 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcct > 1:4590037/1‑70 (MQ=255)
tGCCCAGTGAGAAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGAcc > 1:2919275/1‑70 (MQ=255)
gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:2800717/69‑2 (MQ=255)
gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:3026550/69‑2 (MQ=255)
gtgagaAAATAACGATCTGCCATGGCGCACCGCGCAGGACTTTTCCGGTGTTGATCGAATGACCTCttttc < 1:4383066/69‑2 (MQ=255)
gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:1917654/55‑1 (MQ=255)
gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCg < 1:4328686/55‑1 (MQ=255)
gagaAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGc < 1:1119414/71‑1 (MQ=255)
gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:1095870/1‑55 (MQ=255)
gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:2173623/1‑55 (MQ=255)
gaagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCa > 1:3299263/1‑55 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:2933304/62‑1 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:3255475/62‑1 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:5078090/62‑1 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACcgcg < 1:414333/62‑1 (MQ=255)
aagaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCCTATTAATCGCATGACcgcg < 1:728229/62‑1 (MQ=255)
agaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTaa > 1:2548385/1‑48 (MQ=255)
gaTGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGtt > 1:4425836/1‑62 (MQ=255)
tGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa < 1:3021015/71‑1 (MQ=255)
gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:3648213/1‑70 (MQ=255)
gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:1406680/1‑70 (MQ=255)
gACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACa > 1:4341645/1‑70 (MQ=255)
aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGa > 1:1650575/1‑51 (MQ=255)
aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGAc > 1:5147509/1‑52 (MQ=255)
aCAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACaa < 1:1789208/70‑1 (MQ=255)
|
AAGATATTCCGTTAATCCGGCATTGCGCAGGCCATAAACCACCAGATACATGCCGAGCGAGAAGATGACAATCTGCCAGGGGGCACCGCGCAGGACTTTACCCGTATTAATCGCATGACCGCGTTTAGCGACGACAA > minE/2595683‑2595819
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
