Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
534,474 |
C→T |
G445G (GGC→GGT) |
gcl → |
glyoxylate carboligase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 534,474 | 0 | C | T | 77.3%
| 207.1
/ 56.4
| 141 | G445G (GGC→GGT) | gcl | glyoxylate carboligase |
| Reads supporting (aligned to +/- strand): ref base C (0/32); new base T (109/0); total (109/32) |
| Fisher's exact test for biased strand distribution p-value = 2.00e-32 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 141 total aligned reads displayed.
TGTGCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTCCTGATTGAAGAGTTAGCTGTTGGCGCGCAGT > W3110S.gb/534433‑534523
|
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:1308555/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:639734/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:694146/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:205872/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:218908/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:229260/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:782443/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:1383180/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:136827/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:586836/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:297698/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:835202/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:502767/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:351727/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:889986/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:891770/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:979174/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:360992/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:468057/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:95781/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:1155490/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:38911/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:937751/60‑1 (MQ=255)
tgtgCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTc < 1:439877/60‑1 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTg > 1:1397846/1‑37 (MQ=25)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGcc > 1:788481/1‑47 (MQ=37)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAg > 1:485344/1‑60 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:354841/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:603174/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:602343/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:478062/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:569972/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:540457/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:517801/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:46356/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:517221/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:824459/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:98353/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:960839/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:938343/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:93617/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:925316/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:920044/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:862656/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:846549/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:842/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:828887/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:638369/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:810134/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:796045/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:792670/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:790091/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:774390/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:752605/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:745886/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:710140/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:698588/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1219030/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1353579/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1347722/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1344772/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1330072/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:131139/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1278281/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:126999/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1266627/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:123945/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1230742/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1405840/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:121467/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1191366/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1144687/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1122638/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1087648/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1080670/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1071768/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1069370/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1049816/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1035753/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:201791/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:440343/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:407783/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1013709/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:339410/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:336411/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:327799/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:277234/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:244501/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:237037/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:227933/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:458977/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:179046/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:177153/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:160901/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:153632/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1460009/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1456871/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1451664/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:141953/1‑61 (MQ=255)
gCGATTTCCGGTGACTTCGACTTCCAGTTCCTGATTGAAGAATTAGCCGTTGGCGCACAGt > 1:1409366/1‑61 (MQ=255)
|
TGTGCCGCTGATCCGAAACGCAATGTGGTGGCGATTTCTGGCGACTTTGACTTCCAGTTCCTGATTGAAGAGTTAGCTGTTGGCGCGCAGT > W3110S.gb/534433‑534523
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
