Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
865,345 |
C→G |
S69S (TCG→TCC) |
moeB ← |
molybdopterin synthase sulfurylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 865,345 | 0 | C | G | 99.2%
| 354.9
/ ‑5.8
| 126 | S69S (TCG→TCC) | moeB | molybdopterin synthase sulfurylase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (0/125); minor base A (0/1); total (0/126) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 |
Only 100 of 126 total aligned reads displayed.
ATCACTGTGCAGTGTCTGGCGTTGCAGATTCGAGAGCGAAACCGTGTCGAAGTCGAGCAGCG > W3110S.gb/865315‑865376
|
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGATCGAAACCGTGTCGAAGTCGAGCAGCg < 1:182824/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGGGAAACCGTGTCGAAGTCGAGCAGCg < 1:176485/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGagcagag < 1:384828/62‑3 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:427097/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:596414/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:595453/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:589093/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:584971/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:563169/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:491412/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:467497/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:456125/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:431253/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:427979/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:597793/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:424659/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:325763/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:291848/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:286457/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:259023/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:24435/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:237046/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:781454/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:994812/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:993445/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:972250/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:897397/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:894866/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:890503/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:870422/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:8529/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:841842/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:821421/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:314259/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:774886/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:734340/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:732517/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:702282/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:697875/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:684729/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:669646/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:668273/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:662709/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:603769/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:111232/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1393244/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1367559/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1362664/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:228716/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1316181/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1309550/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1278137/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1187778/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1151445/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1147312/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1340697/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1097584/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1096110/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1090716/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1090663/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1073847/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1065159/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1053919/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1032649/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1026205/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:203975/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:140963/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:184451/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1411573/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:168726/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1427601/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1425303/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1418067/62‑1 (MQ=255)
aTCACTGTGCAGCGTCTGGCGTTGCAGATCGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:238911/62‑1 (MQ=255)
aTCACTGTGCAGAGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:194324/62‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1156657/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:508146/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:145044/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:778629/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1097093/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:383104/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1007108/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:955408/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:627118/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:518396/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:572360/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1373032/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:489540/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1321449/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:72315/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:627965/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:432524/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:129375/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1267277/61‑1 (MQ=255)
tCACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGGCGAGCAGCg < 1:155345/61‑1 (MQ=255)
cACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:397033/60‑1 (MQ=255)
cACTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1427580/60‑1 (MQ=255)
cTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:159099/58‑1 (MQ=255)
cTGTGCAGCGTCTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:576951/58‑1 (MQ=255)
cTGGCGTTGCAGATTGGAGAGCGAAACCGTGTCGAAGTCGAGCAGCg < 1:1335646/47‑1 (MQ=255)
|
ATCACTGTGCAGTGTCTGGCGTTGCAGATTCGAGAGCGAAACCGTGTCGAAGTCGAGCAGCG > W3110S.gb/865315‑865376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
