Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
947,132 |
C→T |
I280I (ATC→ATT) |
ycaD → |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 947,132 | 0 | C | T | 100.0%
| 329.0
/ NA
| 118 | I280I (ATC→ATT) | ycaD | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/118); total (0/118) |
Only 100 of 118 total aligned reads displayed.
TGTCGTCATTCTCGGCAGTATCGCGATGCTTAGCC > W3110S.gb/947111‑947145
|
tGTCGTCATTCTCTGCAGTATTGCGATGCTTAGcc < 1:1199384/35‑1 (MQ=37)
tGTCGTCATTCTCTGCAGTATTGCGATGCTTAGcc < 1:1147614/35‑1 (MQ=37)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTATcc < 1:52168/35‑1 (MQ=25)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTATcc < 1:518667/35‑1 (MQ=25)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGct < 1:1343745/35‑2 (MQ=37)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:470620/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:585998/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:553662/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:540872/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:529691/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:528526/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:520296/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:506643/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:498924/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:605879/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:45951/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:435034/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:430779/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:413147/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:409109/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:401449/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:399744/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:347917/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:347229/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:334399/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:301779/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:296196/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:781078/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:997280/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:963639/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:954881/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:945653/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:944650/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:923225/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:872054/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:841677/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:835434/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:820751/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:819570/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:794704/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:586450/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:755565/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:743710/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:726918/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:714556/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:707881/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:706848/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:680132/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:670801/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:66260/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:649661/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:292646/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1121629/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:295995/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1253456/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1250890/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1235619/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1211823/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1211645/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:118996/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1174371/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1168821/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1155171/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1138628/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1258411/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1117486/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1090456/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:108668/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1077926/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1062681/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1058422/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1056818/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1030024/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1017585/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:101287/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1009988/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1310983/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:287679/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:280651/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:23802/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:236382/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:23541/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:193769/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:184431/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:174256/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:164563/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1470385/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1466487/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1445600/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1442353/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1428844/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1425155/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1378674/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1359949/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1321347/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1320117/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1316335/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1277626/35‑1 (MQ=255)
tGTCGTCATTCTCGGCAGTATTGCGATGCTCAGcc < 1:1003479/35‑1 (MQ=25)
tGTAGTCATTCTCGGCAGTATTGCGATGCTTAGcc < 1:1020811/35‑1 (MQ=25)
|
TGTCGTCATTCTCGGCAGTATCGCGATGCTTAGCC > W3110S.gb/947111‑947145
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
