Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,109,252 |
G→T |
A441S (GCA→TCA) |
ymdC → |
predicted hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,109,252 | 0 | G | T | 83.2%
| 262.1
/ 48.0
| 125 | A441S (GCA→TCA) | ymdC | predicted hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (0/21); new base T (104/0); total (104/21) |
| Fisher's exact test for biased strand distribution p-value = 2.79e-24 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 |
Only 100 of 125 total aligned reads displayed.
GCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTA > W3110S.gb/1109198‑1109267
|
ggcTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:428544/59‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:416072/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:668411/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:1354201/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:136171/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:590726/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:797054/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:1170601/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:1166849/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:461560/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:459028/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:309884/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:950887/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:454895/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:949102/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGGCATGCaaaga < 1:251960/61‑1 (MQ=255)
gCCTGGCAGCTCCGTCAGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:1318536/61‑1 (MQ=255)
gCCTGGAAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaaaga < 1:805769/61‑1 (MQ=255)
cTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCaagga < 1:1041650/59‑1 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:526402/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:539878/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:553371/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:555203/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:560677/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:574502/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:590254/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:512936/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:433664/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:492731/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:702092/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:659867/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:468624/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:855407/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:982480/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:962057/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:961489/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:959786/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:950125/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:948704/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:936609/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:927861/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:919157/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:913313/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:666457/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:850081/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:827664/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:814226/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:809834/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:784741/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:749291/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:718329/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:707049/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:292881/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:693692/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1112539/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1284640/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1273677/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1261491/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1257600/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1251137/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1248698/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1206711/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1206544/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1125272/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1125095/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1113301/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1296268/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1095906/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:107269/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1064891/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1059543/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1043091/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:104118/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:102589/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1020306/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1013121/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1012253/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1470912/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:391148/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:354280/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:100917/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:281630/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:27689/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:23555/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:224696/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:220856/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:181079/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:179594/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:149415/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1447918/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1413018/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1389977/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1387859/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1363716/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1352840/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1316628/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1315339/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1305931/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatta > 1:1299207/1‑52 (MQ=255)
gACAGGTGGGGACGGATCAACTGGGTTGATCGTCATTCAAAGAAAGAGatt > 1:408966/1‑51 (MQ=255)
|
GCCTGGCAGCTCCGTCTGGACAGGTGGGGACGGATCAACTGGGTTGATCGTCATGCAAAGAAAGAGATTA > W3110S.gb/1109198‑1109267
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
