Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,310,802 |
T→G |
S394S (TCA→TCC) |
kch ← |
voltage‑gated potassium channel |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,310,802 | 0 | T | G | 100.0%
| 99.2
/ NA
| 36 | S394S (TCA→TCC) | kch | voltage‑gated potassium channel |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (36/0); total (36/0) |
CCGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCTGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTAAAA > W3110S.gb/1310741‑1310857
|
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATTGCTGAAAATACCATGACCt < 1:349008/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:601317/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:233239/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:279185/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:292126/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:30629/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:377180/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:401440/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:431015/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:435518/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:460893/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:464845/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:49651/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:501148/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:578675/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:5798/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1008784/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:613097/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:622515/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:632077/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:675781/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:738795/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:763090/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:76767/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:936543/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:939359/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:949902/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:956672/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:966858/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:976602/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:99486/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1199436/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1181774/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1277801/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1281790/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:148674/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1282902/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1062181/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1305015/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1305216/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1414387/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1353868/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1352039/62‑1 (MQ=255)
ccGATTCTTTACTGTCAGCTTTCGTTTCTAGCTCATCGTTATCGCTGAAAATACCATGACCt < 1:1315801/62‑1 (MQ=255)
cGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:622980/61‑1 (MQ=255)
cGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:1133428/61‑1 (MQ=255)
gTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCt < 1:441659/49‑1 (MQ=255)
aTGACCGGAGTTCAACAACATTTAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:877328/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1005785/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:826985/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:840605/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1074608/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1052998/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:785189/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1043166/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1150639/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1041050/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:976074/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:729481/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:693667/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1031586/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:993415/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:180968/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1426915/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:244252/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:171324/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:291948/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:170347/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:299090/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:30440/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:330285/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:333302/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:648612/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1392636/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:450828/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:525276/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:54214/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:553542/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1231661/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1225563/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaaaa > 1:1209197/1‑62 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTaa > 1:1088221/1‑60 (MQ=255)
aTGACCGGAGTTCAACAACATTGAAACGAGCAAATCATTATTAATCTCTTCACCATTTaaaa > 1:341242/1‑62 (MQ=255)
|
CCGATTCTTTACTGTCAGCTTTCGTTTCTAGTTCATCGTTATCGCTGAAAATACCATGACCTGAGTTCAACAACATTGAAACGAGCATATCATTATTAATCTCTTCACCATTTAAAA > W3110S.gb/1310741‑1310857
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
