Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,383,822 |
A→T |
S54S (TCA→TCT) |
ompG → |
outer membrane porin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,383,822 | 0 | A | T | 88.9%
| 194.7
/ 13.7
| 81 | S54S (TCA→TCT) | ompG | outer membrane porin |
| Reads supporting (aligned to +/- strand): ref base A (9/0); new base T (72/0); total (81/0) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAA > W3110S.gb/1383770‑1383856
|
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:1307334/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:371113/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:36751/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:616337/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:1357156/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:1353977/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:663019/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:1097060/1‑62 (MQ=255)
tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTAtttt > 1:1122073/1‑62 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGcc > 1:1305929/1‑39 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCg > 1:591028/1‑40 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCg > 1:848985/1‑40 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTg > 1:98741/1‑42 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:985481/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:622494/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:590553/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:555895/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:549981/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:524205/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:490649/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:485196/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:482185/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:43599/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:409470/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:394227/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:39185/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:389622/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:38429/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:723105/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:922339/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:912745/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:90786/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:861297/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:837518/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:835144/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:809390/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:742993/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:617274/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:71831/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:689541/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:337183/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:64217/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:949682/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:956122/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:937639/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1184664/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1259012/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:12526/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1250546/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:12410/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1230839/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1205895/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1198889/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1192454/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1292164/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1182541/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1174477/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1138982/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1123272/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1108519/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1107003/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:110221/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1045170/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:197377/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:342417/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1028213/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:326379/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:290558/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:267069/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:262048/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:232297/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:224718/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:35223/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:189804/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:159706/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1464745/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1452975/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1406358/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1396554/1‑47 (MQ=255)
ggCGGAGCCTTCTGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1370944/1‑47 (MQ=255)
ggCGGAGCCTTATGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa > 1:1321403/1‑47 (MQ=39)
|
TAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAA > W3110S.gb/1383770‑1383856
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
