Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,551,751 |
G→A |
A879A (GCG→GCA) |
fdnG → |
formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,551,751 | 0 | G | A | 100.0%
| 114.6
/ NA
| 43 | A879A (GCG→GCA) | fdnG | formate dehydrogenase‑N, alpha subunit, nitrate‑inducible |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/43); total (0/43) |
TAACCCGGTTGTTCGTCTGTATGAACAAGACGCGCTGCGGATGGGTAAAAAAGAGCAGTTCCCGTATGTGGGTACGACCTATCGTCTGACCG > W3110S.gb/1551718‑1551809
|
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:676215/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:376854/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:385877/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1066748/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:458079/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:471810/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:540242/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:577569/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:609543/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:630600/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:655703/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:449614/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:72264/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:732168/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:768543/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:896863/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:902581/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:905240/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:910026/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:946799/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:997677/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1317197/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1120428/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1192437/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1204329/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1210682/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1219917/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1242022/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1275744/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1280597/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:285468/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1361846/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1443119/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:146834/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:170040/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:234891/62‑1 (MQ=255)
tAACCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:264400/62‑1 (MQ=255)
aaCCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:631465/61‑1 (MQ=255)
aaCCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1247879/61‑1 (MQ=255)
aaCCCGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:780736/61‑1 (MQ=255)
cccGGTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:21149/59‑1 (MQ=255)
ggTTGTTCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:946737/56‑1 (MQ=255)
ttgttCGTCTGTATGAACAAGACGCACTGCGGATGGGTAAAAAAGAGCAGTTcc < 1:1396245/54‑1 (MQ=255)
cgcgCTGCGGATGGGTAAAAAAGAGCAGTTCCCGTATGTGGGTAc > 1:534728/1‑45 (MQ=255)
cgcgCTGCGGATGGGTAAAAAAGAGCAGTTCCCGTATGTGGGTACGACCTATCGTCTGACCg > 1:1339657/1‑62 (MQ=255)
cgcgCTGCGGATGGGTAAAAAAGAGCAGTTCCCGTATGTGGGTACGACCTATCGTCTGACCg > 1:584/1‑62 (MQ=255)
cgcgCTGCGGATGGGTAAAAAAGAGCAGTTCCCGTATGTGGGTACGACCTATCGTCTGACCg > 1:913681/1‑62 (MQ=255)
|
TAACCCGGTTGTTCGTCTGTATGAACAAGACGCGCTGCGGATGGGTAAAAAAGAGCAGTTCCCGTATGTGGGTACGACCTATCGTCTGACCG > W3110S.gb/1551718‑1551809
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
