Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,632,595 |
T→C |
T11T (ACA→ACG) |
ydfI ← |
predicted mannonate dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,632,595 | 0 | T | C | 100.0%
| 83.3
/ NA
| 31 | T11T (ACA→ACG) | ydfI | predicted mannonate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (31/0); total (31/0) |
AAATGAACAATTCTTGGAGCCAGGTTATTAAGATCATAAACAGGGAGTGTCGCTTTTGCTG > W3110S.gb/1632548‑1632608
|
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAgcgt > 1:108970/1‑50 (MQ=38)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCt > 1:1365606/1‑60 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCt > 1:759714/1‑60 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:870327/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:869662/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:811839/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:762833/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:899857/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:311310/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:710223/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:678374/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:665371/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:664038/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:517465/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:414102/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:369284/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:982288/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:287203/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:256641/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:163955/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1460199/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1454761/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1418820/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1416957/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1308387/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:128674/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1260666/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:124509/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1209365/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1162394/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCTTTTGCTg > 1:1157263/1‑61 (MQ=255)
aaaTGAACAATTCTTGGGGCCAGGTTATTACGATCATAAACAGGGAGCGTCGCGTTTGCTg > 1:326719/1‑61 (MQ=255)
|
AAATGAACAATTCTTGGAGCCAGGTTATTAAGATCATAAACAGGGAGTGTCGCTTTTGCTG > W3110S.gb/1632548‑1632608
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
