Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,708,728 |
A→G |
T32T (ACA→ACG) |
rsxC → |
fused predicted 4Fe‑4S ferredoxin‑type protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,708,728 | 0 | A | G | 100.0%
| 321.0
/ NA
| 112 | T32T (ACA→ACG) | rsxC | fused predicted 4Fe‑4S ferredoxin‑type protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (112/0); total (112/0) |
Only 100 of 112 total aligned reads displayed.
GATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTAC > W3110S.gb/1708704‑1708744
|
gaTGAAAACCCAGTCCAACTGTACGCCCCTGCGCCAGGTAc > 1:1279061/1‑41 (MQ=38)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAg > 1:15280/1‑37 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTa > 1:916974/1‑40 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTa > 1:63569/1‑40 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTa > 1:138426/1‑40 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:498026/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:619981/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:57962/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:5784/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:561630/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:544101/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:543546/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:51412/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:51267/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:507551/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:632240/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:4649/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:46028/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:452578/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:439949/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:436876/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:400500/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:397513/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:385980/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:350701/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:350501/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:34732/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:738337/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:961280/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:93531/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:902289/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:882005/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:874343/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:849787/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:818275/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:773881/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:760313/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:745941/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:744300/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:620873/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:731496/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:726713/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:724079/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:712988/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:706022/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:700841/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:69951/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:66771/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:649106/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:323206/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:630201/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1142935/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1280656/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1265036/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1261992/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1253906/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1246888/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1242819/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1231541/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1199484/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1179315/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1160469/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1151777/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1316290/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1140669/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1123172/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1111258/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:109172/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1064536/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1057890/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1057036/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1056482/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1034789/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1031341/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1028369/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:185392/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:268975/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:261334/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:257730/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:257047/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:250872/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:250053/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:249261/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:244979/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:234900/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:22925/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:101040/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:165285/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:156414/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:151439/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1444002/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1394768/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1385567/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1379342/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1372042/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1326862/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1319650/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGGTACGCCCCTGCGCCAGGTAc > 1:1318096/1‑41 (MQ=255)
gaTGAAAACCCAGTCCAACGCTACGCCCCTGCGCCAGGTAc > 1:420513/1‑41 (MQ=38)
gaTGAAAACCCAGACCAACGGTACGCCCCTGCGCCAgg > 1:845487/1‑38 (MQ=38)
|
GATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTAC > W3110S.gb/1708704‑1708744
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
