Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,955,959 |
A→T |
V268V (GTA→GTT) |
yecP → |
predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,955,959 | 0 | A | T | 100.0%
| 372.0
/ NA
| 134 | V268V (GTA→GTT) | yecP | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (134/0); total (134/0) |
Only 100 of 134 total aligned reads displayed.
CCTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTAGATATCCGCA > W3110S.gb/1955912‑1955969
|
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:1390505/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:949000/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:900222/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGc > 1:838799/1‑57 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:509527/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:634009/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:617373/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:61017/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:591241/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:589288/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:582496/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:557905/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:529475/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:528659/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:522213/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:510928/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:70044/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:496448/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:492232/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:48430/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:481971/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:480552/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:466492/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:453044/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:43866/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:437740/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:41239/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:398763/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:850744/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:995861/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:994112/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:96798/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:957121/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:926092/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:905409/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:890615/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:885065/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:881773/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:863131/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:851940/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:678189/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:806003/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:796971/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:776971/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:762742/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:758535/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:728966/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:72721/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:722487/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:705556/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:365313/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1152661/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1373599/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1336231/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1327203/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1317105/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1298451/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1263685/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1236415/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1199275/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1197674/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1180692/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1175881/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1157530/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1388950/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1092651/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1086373/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1073007/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1056373/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:105528/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1047605/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1038823/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1038294/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1017084/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1009590/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1008492/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:191653/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:357318/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:353512/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:346557/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:317108/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:31242/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:292927/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:282002/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:255501/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:247596/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:215646/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:213343/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1007138/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:191318/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:187452/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:168143/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:156643/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:151958/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1471811/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1465969/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1451837/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:14381/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1432194/1‑58 (MQ=39)
ccTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTTGATATTCGCa > 1:1403446/1‑58 (MQ=39)
|
CCTTCCGCGCTGGCGCTGAAAAACTGGCTGAAGAAGTGTGGTTTTGTAGATATCCGCA > W3110S.gb/1955912‑1955969
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
