Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,494,775 |
A→G |
R286R (CGT→CGC) |
yfdV ← |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,494,775 | 0 | A | G | 100.0%
| 172.4
/ NA
| 61 | R286R (CGT→CGC) | yfdV | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (61/0); total (61/0) |
CAGTACGCTCACAGCCAATGACGCTGTACCAGTACGG > W3110S.gb/2494742‑2494778
|
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:76601/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1003072/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:408837/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:517573/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:580135/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:58305/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:590608/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:627117/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:649605/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:671497/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:677159/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:693118/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:702606/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:722932/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:751253/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:39756/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:775504/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:829346/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:84445/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:854957/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:859744/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:86666/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:879270/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:882608/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:910217/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:91581/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:948313/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:95953/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:961063/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:998806/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1376152/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1039073/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1129945/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1151887/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1160424/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1178522/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:119283/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1223734/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1282850/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1302710/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:134285/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1350193/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1368211/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:395856/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1410346/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:386750/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:373853/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:365604/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:246894/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:233475/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:211414/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:210169/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:165441/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1469413/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:143092/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCgg > 1:1391980/1‑37 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCg > 1:1215418/1‑36 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCg > 1:89591/1‑36 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCg > 1:276622/1‑36 (MQ=255)
cAGTACGCTCACAGCCAATGACGCTGTACCAGTGCg > 1:515410/1‑36 (MQ=255)
cAGTACGCTCACAGCAAATGACGCTGTACCAGTGCgg > 1:1212496/1‑37 (MQ=38)
|
CAGTACGCTCACAGCCAATGACGCTGTACCAGTACGG > W3110S.gb/2494742‑2494778
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
