Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,499,989 |
A→G |
intergenic (‑141/‑155) |
yfdX ← / → ypdI |
hypothetical protein/predicted lipoprotein involved in colanic acid biosynthesis |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,499,989 | 0 | A | G | 100.0%
| 335.1
/ NA
| 97 | intergenic (‑141/‑155) | yfdX/ypdI | hypothetical protein/predicted lipoprotein involved in colanic acid biosynthesis |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (33/64); total (33/64) |
TTTTGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACC > W3110S.gb/2499933‑2500037
|
ttttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1806677/62‑1 (MQ=255)
tttGTAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2213289/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTGTTTTAGTCTTGCAAtt < 1:1612144/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:530510/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2029246/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1814913/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2715505/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2732702/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2825081/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1739439/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2830809/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1710275/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2054062/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:394981/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:458670/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1399937/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:122536/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1052844/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1037454/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1171213/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:893029/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1194522/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:815859/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1365000/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:7947/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:744169/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2159792/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1333873/61‑1 (MQ=255)
tttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATATTAGTCTTGCAAtt < 1:1755343/61‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2618708/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:255781/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:990044/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2572891/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2401658/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2705970/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2865537/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:361298/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:529438/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:623222/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:672080/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:813021/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:988065/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1067227/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1290038/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1451905/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1508045/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:173626/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1749879/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:2056388/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:1943239/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTCGCAAtt < 1:27769/60‑1 (MQ=255)
ttGAAAGGGTTATCTTACAGTTGTAGTTATTATCCCAAGAAGTATTTTAGTCTTGCAAtt < 1:1457228/60‑1 (MQ=255)
cTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAAtt < 1:223057/47‑1 (MQ=255)
aCAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTg > 1:2328581/1‑62 (MQ=255)
aCAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTg > 1:3661/1‑62 (MQ=255)
aCAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTg > 1:2331965/1‑62 (MQ=255)
aCAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTg > 1:2696699/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTa > 1:2085442/1‑46 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:949536/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:1319361/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:6007/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:1400439/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:1286657/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:1197272/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:846642/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:455246/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:1507482/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:867727/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:320562/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:984103/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:2111798/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:1745532/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:280720/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:2759175/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:98957/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:1752032/1‑62 (MQ=255)
cAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGt > 1:2622768/1‑62 (MQ=255)
attatCGCAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACt < 1:1178612/62‑1 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCtt > 1:2505988/1‑61 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCtt > 1:2417130/1‑61 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTta > 1:495879/1‑62 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTta > 1:96704/1‑62 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTta > 1:1079149/1‑62 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTta > 1:1295443/1‑62 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTta > 1:2397267/1‑62 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTta > 1:372255/1‑62 (MQ=255)
cAAGAAGTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTta > 1:1512015/1‑62 (MQ=255)
gcaTTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:2615801/60‑1 (MQ=255)
gTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:1231565/62‑1 (MQ=255)
gTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:522695/62‑1 (MQ=255)
gTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:872973/62‑1 (MQ=255)
gTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:361371/62‑1 (MQ=255)
gTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:2883616/62‑1 (MQ=255)
gTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:2878322/62‑1 (MQ=255)
gTATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:2288145/62‑1 (MQ=255)
tATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:456173/61‑1 (MQ=255)
tATTTTAGTCTTGCAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATAcc < 1:2443043/61‑1 (MQ=255)
|
TTTTGAAAGGGTTATCTTACAGTTGTAGTTATTATCGCAAGAAGTATTTTAGTCTTACAATTGTAGGAATATGCTTCCTGTCGCAGAGAACTATTCTTATATACC > W3110S.gb/2499933‑2500037
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
