Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,661,826 |
+C |
coding (154/741 nt) |
yfhQ ← |
predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,661,822 | 1 | . | C | 100.0%
| 157.8
/ NA
| 56 | A53G (GCC→GGC) | yfhQ | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (0/56); total (0/56) |
TACCAATCACATCGCTGG‑CCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAG > W3110S.gb/2661805‑2661865
|
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTTGGAGTCGGGTTTCACCAg < 1:1317614/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:604418/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1034654/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:363048/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:370660/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:446516/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:483650/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:489198/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:498561/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:545255/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:567380/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:573598/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:575454/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:580899/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:590561/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:331125/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:654955/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:673286/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:675411/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:790489/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:793674/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:813292/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:838382/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:850479/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:8837/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:937271/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:957285/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:958343/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1388783/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1113922/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1148278/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1180017/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1207721/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:122559/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1265989/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1270601/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1306061/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1308366/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1343505/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1043239/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1415626/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1438839/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1470273/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:159741/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:163528/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:183801/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:187784/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:189629/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:200283/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:228379/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:251267/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:306216/62‑1 (MQ=255)
tACCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGCGAGTCGGGTTTCACCAg < 1:701793/62‑1 (MQ=255)
aCCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:334797/61‑1 (MQ=255)
aCCAATCACATCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1063217/61‑1 (MQ=255)
acaTCGCTGGCCCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAg < 1:1354215/54‑1 (MQ=39)
|
TACCAATCACATCGCTGG‑CCCCTGCTGCCAGGGCAATCGCCTGGGAGTCGGGTTTCACCAG > W3110S.gb/2661805‑2661865
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
