Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,789,003 |
C→G |
D122E (GAC→GAG) |
ygaF → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,789,003 | 0 | C | G | 100.0%
| 173.2
/ NA
| 61 | D122E (GAC→GAG) | ygaF | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (61/0); total (61/0) |
CAGCGGCGAACGGTATCGAGCGCGAATGGCTTAACGCCGACGAACTGCGCGAGCGCGAACCG > W3110S.gb/2788963‑2789024
|
ctgcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:175674/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAAc > 1:282517/3‑45 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTgcgcga > 1:182358/3‑52 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:572095/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:294164/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:31421/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:335637/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:351752/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:399324/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:406668/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:424051/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:488438/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:50030/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:519182/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:541404/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:554604/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:267432/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:573572/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:586641/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:645109/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:648785/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:65208/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:652445/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:712307/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:801034/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:8124/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:856144/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:865864/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:897796/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:97340/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:980816/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1221485/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1072773/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1095411/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1096170/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1102937/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1148645/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1149085/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1161767/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1184985/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:11964/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1203202/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1010091/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:12261/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1302554/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:234214/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:213324/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:183219/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1460235/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:145281/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1429355/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1321845/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1313412/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:1242922/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcc > 1:1188968/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcc > 1:1449128/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcc > 1:337471/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcc > 1:1102432/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGGAACCTCGCGAGCGCGAAcca > 1:1201540/3‑61 (MQ=255)
cggcggcgAACGGAATCGATCGCGAGTGGTTAAACGCCGAGAAACTGCGCGAGCGCGAAcca > 1:1144141/3‑61 (MQ=255)
cggcggcgAACGCAATCGATCGCGAGTGGTTAAACGCCGAGGAACTGCGCGAGCGCGAAcca > 1:494432/3‑61 (MQ=255)
|
CAGCGGCGAACGGTATCGAGCGCGAATGGCTTAACGCCGACGAACTGCGCGAGCGCGAACCG > W3110S.gb/2788963‑2789024
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
