Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,811,006 |
G→C |
A308A (GCG→GCC) |
emrA → |
multidrug efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,811,006 | 0 | G | C | 99.2%
| 338.5
/ ‑5.1
| 120 | A308A (GCG→GCC) | emrA | multidrug efflux system |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (0/119); minor base A (0/1); total (0/120) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
Only 100 of 120 total aligned reads displayed.
TAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGC > W3110S.gb/2810973‑2811034
|
tAGCTCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1364677/62‑1 (MQ=37)
tAGCGCGTTCTCGCTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1144503/62‑1 (MQ=37)
tAGCGCGTTCTCACTGCTTCCTGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:76346/62‑1 (MQ=37)
tAGCGCGTTCTCACTGCTTCCGTCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:799652/62‑1 (MQ=37)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCGAAGTCGTTCAGc < 1:396881/62‑1 (MQ=255)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:508850/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:641668/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:613177/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:582017/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:562453/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:55139/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:537533/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:536096/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:533151/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:516786/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:514316/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:663832/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:507874/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:500679/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:489792/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:475151/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:473014/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:417628/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:415954/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:412124/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:100474/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:371486/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:829640/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:98315/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:980238/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:966875/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:955576/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:940247/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:914057/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:898210/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:89146/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:877237/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:834085/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:654392/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:826761/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:816651/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:788063/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:780218/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:754814/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:752289/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:732422/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:676780/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:667679/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:382712/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1153445/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1373242/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:352946/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1327193/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1304813/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:126780/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:125568/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1247168/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1239093/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1222099/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1199628/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1344658/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1150884/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:113510/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1126301/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1118696/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1111555/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1088215/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1068081/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1047868/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1038727/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1038372/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:232144/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:3515/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:337280/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:334089/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:318145/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:293943/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:28541/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:28373/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:240718/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1398860/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:222025/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:215587/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:178677/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1466910/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:213688/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1440692/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1434912/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1423400/62‑1 (MQ=38)
tAGCGCGTTCTCACTGCTTCCGGCGCAAAACGCAACCGGTAACTGGATCAAAGTCGTTCAGc < 1:617975/62‑1 (MQ=38)
aGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:267224/61‑1 (MQ=37)
aGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:483022/61‑1 (MQ=37)
aGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:722402/61‑1 (MQ=37)
aGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1270429/61‑1 (MQ=37)
aGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1400065/61‑1 (MQ=37)
aGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:1053086/61‑1 (MQ=37)
aGCGCGTTCTCACTGCTTCCGGCGCAAAACGCCACCGGTAACTGGATCAAAGTAGTTCAGc < 1:1163016/61‑1 (MQ=37)
tctcACTGCTTCCGTCGCAAAACGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:890560/54‑1 (MQ=25)
cAAAACGCCAGCGGTAACTGGATCAAAGTCGTTCAGc < 1:1247740/37‑1 (MQ=18)
aaaaCGCCACCGGTAACTGGATCAAAGTCGTTCAGc < 1:461719/36‑1 (MQ=18)
|
TAGCGCGTTCTCACTGCTTCCAGCGCAAAATGCGACCGGTAACTGGATCAAAGTCGTTCAGC > W3110S.gb/2810973‑2811034
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
