Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,023,318 |
C→T |
G104G (GGC→GGT) |
ygfO → |
predicted transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,023,318 | 0 | C | T | 100.0%
| 136.4
/ NA
| 50 | G104G (GGC→GGT) | ygfO | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/50); total (0/50) |
TCAATTTTTCATTTGTTACGGTCATGATTGCGCTGGGCAGCAGCATGAAAAGCGACGGTTT > W3110S.gb/3023281‑3023341
|
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGTTAGCAGCATGAAAAGCGACGGttt < 1:38898/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:656362/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:100921/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:291902/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:335301/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:359122/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:457316/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:458678/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:499776/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:518745/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:533546/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:543943/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:565541/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:276393/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:737272/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:741269/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:789394/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:796380/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:79772/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:841486/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:842106/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:956951/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:971747/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:975190/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:994071/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:260652/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1018590/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1064303/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:112245/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1169615/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1186971/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1231613/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1260135/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1272143/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1285129/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1353956/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1379919/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1402966/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1430230/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1451221/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1459354/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:152517/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:180028/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:230066/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:255669/61‑1 (MQ=255)
tcaATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:275053/61‑1 (MQ=255)
caATTTTTCATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1129407/60‑1 (MQ=255)
caATTTTTCATTTGTTACGGGCATGATTGCGCTGGGTAGCATCATGAAAAGCGACTGttt < 1:446088/60‑1 (MQ=255)
cATTTGTTACGGTCATGATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:1392419/52‑1 (MQ=255)
gATTGCGCTGGGTAGCAGCATGAAAAGCGACGGttt < 1:183447/36‑1 (MQ=255)
|
TCAATTTTTCATTTGTTACGGTCATGATTGCGCTGGGCAGCAGCATGAAAAGCGACGGTTT > W3110S.gb/3023281‑3023341
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
