Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,083,397 |
C→T |
S353S (AGC→AGT) |
rtcB → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,083,397 | 0 | C | T | 100.0%
| 318.2
/ NA
| 113 | S353S (AGC→AGT) | rtcB | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/113); total (0/113) |
Only 100 of 113 total aligned reads displayed.
CAGCGTGGAAGATCAAATTCGTGCCACCGCGCATGTGGAATGCCGTAAAGATGCCGAAGTGA > W3110S.gb/4083394‑4083455
|
cAGTGTGGAATATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1226596/62‑1 (MQ=255)
cAGTGTGGAAGATCAGATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1346250/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGATTGCCGTAAAGATGCCGAGGTGa < 1:1044945/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGATTGCCGTAAAGATGCCGAGGTGa < 1:1234601/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGATTGCCGTAAAGATGCCGAGGTGa < 1:585129/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCTAGGTGa < 1:785037/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:594080/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:726102/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:71706/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:716840/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:716589/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:714986/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:679184/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:642751/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:632310/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:627238/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:756082/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:548195/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:547412/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:496484/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:467680/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:419374/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:415582/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:404344/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:400802/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:375852/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:344804/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:343919/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:837741/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:976524/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:974834/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:968462/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:951284/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:921141/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:887927/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:870521/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:842610/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:841124/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:83896/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:837840/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:729094/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:836789/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:831956/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:828857/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:782279/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:77618/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:770794/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:765052/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:762326/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:760359/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:321880/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:737085/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1138574/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:332088/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1326260/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1325641/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1317488/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1316620/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1303956/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:126628/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1246496/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1223654/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1197419/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1189370/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1338935/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1136299/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1124738/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1124334/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:11196/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1102759/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1095939/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1086421/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1074744/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1062444/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1047908/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1041777/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1455387/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:103051/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:303502/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:260310/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:228955/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:207915/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:197085/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:186527/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:183639/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:170204/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:156310/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1340540/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1437468/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1430270/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1430161/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1430114/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:142395/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1423562/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:138083/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1373625/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:137094/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1347696/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCGCGCATGTGGACTGCCGTAAAGATGCCGAGGTGa < 1:483568/62‑1 (MQ=255)
cAGTGTGGAAGATCAAATCCGTGCCACCACGCATGTGGAGTGCCGTAAAGATGCCGAGGTGa < 1:1294266/62‑1 (MQ=255)
|
CAGCGTGGAAGATCAAATTCGTGCCACCGCGCATGTGGAATGCCGTAAAGATGCCGAAGTGA > W3110S.gb/4083394‑4083455
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
