Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,354,640 |
T→C |
P25P (CCA→CCG) |
dcuR ← |
DNA‑binding response regulator in two‑component regulatory system with DcuS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,354,640 | 0 | T | C | 100.0%
| 277.7
/ NA
| 98 | P25P (CCA→CCG) | dcuR | DNA‑binding response regulator in two‑component regulatory system with DcuS |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (98/0); total (98/0) |
Only 100 of 128 total aligned reads displayed.
CTCCAGCGTCGAGGCTGTTCCACAGCATTGAAAGCCTGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGATAATT > W3110S.gb/4354604‑4354700
|
ctcCAGCGTTGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:312533/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCgg > 1:544539/1‑39 (MQ=37)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTa > 1:1031920/1‑54 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATcgacga > 1:110952/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCgg > 1:322075/1‑58 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:354896/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:481084/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:476848/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:476817/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:466523/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:46249/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:43481/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:412565/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:405593/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:399783/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:379287/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:284191/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:351818/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:345452/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:316282/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:301941/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:298874/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1016087/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:73754/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:9820/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:940741/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:894809/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:878834/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:872556/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:86497/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:773014/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:761417/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:748557/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:499295/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:696966/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:683439/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:655518/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:636285/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:611363/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:607880/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:595366/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:546308/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:532082/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1294152/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:137553/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1046197/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1370634/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1370245/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:136588/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1358477/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1357770/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1349859/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:200105/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1291718/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:128660/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1241332/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1214762/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1092684/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1150329/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1140660/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1378706/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1004308/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:183632/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1018010/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:170519/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1024421/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:144114/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1434093/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1421369/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1376960/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1386916/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1387187/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1417681/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1412033/1‑61 (MQ=255)
ctcCAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGAGTTGTGCCACGTATCGGCGa > 1:49514/1‑61 (MQ=255)
ctcCAGCGTCCAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:1324068/1‑61 (MQ=255)
ccccAGCGTCGAAGCCGTTCCACAGCATTGAAAGCCCGGGATTTGTGCCACGTATCGGCGa > 1:884229/3‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGcgtc > 1:1052336/1‑48 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:786645/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:79373/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:1077399/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:1070073/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:995425/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:111338/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:73886/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:1132918/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:734834/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:1181291/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:626198/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:1290328/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:555185/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:1341202/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:453106/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:433812/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:32868/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:303145/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:173372/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:263974/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaatt > 1:204898/1‑61 (MQ=255)
tGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGAtaat > 1:797412/1‑60 (MQ=255)
|
CTCCAGCGTCGAGGCTGTTCCACAGCATTGAAAGCCTGGGATTTGTGCTACGTATCGGCGATTCAGCTCCGCGACCATTGCGTCGTCATCGATAATT > W3110S.gb/4354604‑4354700
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
