Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,580,803 |
C→T |
pseudogene (1987/2721 nt) |
yjiV → |
ECK4334:JW5954:b4486; conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,580,803 | 0 | C | T | 100.0%
| 78.8
/ NA
| 30 | pseudogene (1987/2721 nt) | yjiV | ECK4334:JW5954:b4486; conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (30/0); total (30/0) |
ATCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGCCGGAGTGGCAC > W3110S.gb/4580753‑4580814
|
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCa > 1:1098677/1‑61 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:273886/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:914072/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:911871/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:860066/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:712607/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:700600/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:69857/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:691202/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:669661/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:66732/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:661913/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:64943/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:45673/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:424490/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:33933/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1039824/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:207201/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:190408/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:141221/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1381024/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1362014/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1202817/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1179938/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1177855/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1075352/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1070357/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1070201/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGTCGGAGTGGCAc > 1:1043638/1‑62 (MQ=255)
aTCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATCCCGGGGTCGGAGTGGCAc > 1:1456735/1‑62 (MQ=255)
|
ATCGCGTGATGACGCTGGCCTCTCGCAGCCAGCAGGCAACGATTCCGGGGCCGGAGTGGCAC > W3110S.gb/4580753‑4580814
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
