Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
602,570 |
2 bp→CG |
intergenic (+12/+68) |
pheP → / ← ybdG |
phenylalanine transporter/predicted mechanosensitive channel |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 602,570 | 0 | T | C | 100.0%
| 146.1
/ NA
| 78 | intergenic (+12/+69) | pheP/ybdG | phenylalanine transporter/predicted mechanosensitive channel |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/78); total (0/78) |
| * | W3110S.gb | 602,571 | 0 | A | G | 100.0%
| 150.7
/ NA
| 78 | intergenic (+13/+68) | pheP/ybdG | phenylalanine transporter/predicted mechanosensitive channel |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/78); total (0/78) |
TCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCC > W3110S.gb/602564‑602614
||
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:69221/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:8051/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:78961/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:78023/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:76885/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:74779/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:73422/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:71720/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:71627/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:70776/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:8052/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:68911/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:66639/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:66440/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:64936/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:62236/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:60130/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:58509/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:57554/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:1194/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:84479/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:9241/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:9230/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:8939/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:88647/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:87926/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:87225/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:8638/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:85872/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:84588/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:56902/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:84427/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:84120/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:84103/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:83258/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:81684/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:81383/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:81225/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:80857/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:2373/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:27748/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:26904/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:26552/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:26091/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:26062/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:25927/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:24623/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:24360/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:24296/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:2962/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:2339/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:2127/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:21181/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:18707/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:15823/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:15125/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:14670/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:13632/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:42582/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:54741/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:54482/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:49122/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:4465/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:44522/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:44292/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:13441/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:43550/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:42440/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:41730/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:38367/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:37081/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:33747/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:31936/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:30324/51‑1 (MQ=37)
tCACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:29637/51‑1 (MQ=37)
cACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:12093/50‑1 (MQ=37)
cACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:43991/50‑1 (MQ=37)
cACGCCGCATCCGACAAAATGATGTCAACCATCCGAAACCGCTCTCATcc < 1:57471/50‑1 (MQ=37)
||
TCACGCTACATCCGACAAAACGATGTCAACCATCCGAAACCGCTCTCATCC > W3110S.gb/602564‑602614
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
