Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
719,583 |
G→A |
L434L (CTG→TTG) |
speF ← |
ornithine decarboxylase isozyme, inducible |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 719,583 | 0 | G | A | 100.0%
| 124.2
/ NA
| 69 | L434L (CTG→TTG) | speF | ornithine decarboxylase isozyme, inducible |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (69/0); total (69/0) |
ACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATT > W3110S.gb/719554‑719595
|
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:519/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:62224/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:61690/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:59942/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:5901/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:57598/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:57425/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:53395/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:53093/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:6412/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:51622/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:51089/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:49821/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:49644/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:49339/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:47843/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:4634/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:45168/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:78304/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:9212/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:86049/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:85895/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:85129/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:82218/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:81774/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:80808/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:78729/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:44102/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:77445/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:77359/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:77210/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:71365/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:69905/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:67354/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:64165/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:14865/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:24191/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:23768/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:22376/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:22344/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:21648/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:20786/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:18948/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:16369/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:2427/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:14577/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:14006/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:12714/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:1247/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:12464/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:11436/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:11386/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:30756/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:43373/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:4259/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:41854/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:39827/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:36630/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:36363/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:3557/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:31069/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:11362/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:30354/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:29815/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:28230/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:25449/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:2534/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:24836/2‑42 (MQ=37)
gcGAATGTGCTGGCAGTTATCGAGGATCAATTTGCGGGCAtt > 1:24527/2‑42 (MQ=37)
|
ACGAATATGCTGACAGTTATCGAGGATCAGTTTGCGGGCATT > W3110S.gb/719554‑719595
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
