Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,659,572 |
C→T |
A98A (GCC→GCT) |
ynfD → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,659,572 | 0 | C | T | 100.0%
| 157.2
/ NA
| 87 | A98A (GCC→GCT) | ynfD | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/87); total (0/87) |
GTAACGTCTCTGCTCCCGCGCAGTCTAGCCAGGATGGCGCGCCTGCCGAACCGCAGTAACAC > W3110S.gb/1659526‑1659587
|
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:55201/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:68217/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:67884/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:66248/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:61090/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:59450/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:58698/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:57351/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:573/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:55374/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:68305/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:51709/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:51347/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:10360/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:50596/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:50313/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:49925/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:48729/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:46579/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:82237/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:9154/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:9096/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:88443/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:88362/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:88173/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:87725/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:87616/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:87304/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:84946/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:50674/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:8200/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:804/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:7488/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:73809/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:72626/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:72467/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:70856/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:68422/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:21640/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:32972/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:31473/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:31006/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:45506/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:26989/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:25446/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:25417/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:25346/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:24882/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:27717/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:20995/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:17873/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:17155/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:15569/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:14547/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:12507/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:10810/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:10671/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:44602/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:34006/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:43679/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:4352/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:43350/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:41123/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:40109/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:36272/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:38027/62‑1 (MQ=255)
gTAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:38097/62‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:23696/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:16790/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:86269/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:3976/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:8478/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:38370/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:80318/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:80076/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:73052/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:35738/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:35490/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:71070/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:60737/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:34683/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:63096/61‑1 (MQ=255)
tAACGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:67314/61‑1 (MQ=255)
cGTCTCTGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:67445/58‑1 (MQ=255)
tGCTCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:82291/52‑1 (MQ=255)
tCCCGCGCAGTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:68254/49‑1 (MQ=255)
gTCTACCCAGGATAACGCGCCTGCTGAACCGCAGTAacac < 1:12810/40‑1 (MQ=25)
|
GTAACGTCTCTGCTCCCGCGCAGTCTAGCCAGGATGGCGCGCCTGCCGAACCGCAGTAACAC > W3110S.gb/1659526‑1659587
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
