Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,000,485 |
A→G |
R44R (CGT→CGC) |
yecS ← |
predicted transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,000,485 | 0 | A | G | 100.0%
| 82.9
/ NA
| 46 | R44R (CGT→CGC) | yecS | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (46/0); total (46/0) |
GCGCCAGCCAGCGCACGGGCCAGATTGGCGACAGACGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGTT > W3110S.gb/2000451‑2000546
|
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCa > 1:76331/1‑39 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATc > 1:45340/1‑41 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:66332/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:39002/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:39227/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:40041/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:40323/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:41670/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:42495/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:47089/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:47764/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:50008/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:57259/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:60365/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:61363/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:65214/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:12571/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:68547/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:69944/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:7008/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:73711/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:75591/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:79230/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:80061/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:81403/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:84579/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:8671/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:87445/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:9343/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:12470/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:21326/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:24166/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:24192/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:20760/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:20477/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:18984/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:18197/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:25458/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:16885/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:16572/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:25754/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:26314/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:13739/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:35093/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:32439/1‑42 (MQ=255)
gcgcCAGCCAGCGCACGGGCCAGATTGGCGACAGGCGCATCa > 1:32047/1‑42 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:75904/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:63987/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:69135/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:87803/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:87681/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:21321/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:72234/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:74815/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:84652/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:12925/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:77629/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:78141/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:86777/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:86244/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:16503/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:84100/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:15165/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:86106/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:54668/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:36368/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:37715/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:38121/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:31122/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:30330/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:29928/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:28874/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:45372/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:2637/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:50347/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:53005/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:53999/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:67304/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:56931/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:57565/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:57901/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:58315/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:58344/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:58522/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:60083/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:25225/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:24694/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:61676/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:36328/62‑1 (MQ=255)
aCGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGtt < 1:66878/62‑1 (MQ=255)
|
GCGCCAGCCAGCGCACGGGCCAGATTGGCGACAGACGCATCAGCGCGAGAATAAACCCGAGCAGTAAGCCAAAAAACATGCCGCCGATACTGAGTT > W3110S.gb/2000451‑2000546
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
