Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,267,108 |
C→T |
intergenic (‑279/‑89) |
fruB ← / → setB |
fused fructose‑specific PTS enzyme IIA component and HPr component/lactose/glucose efflux system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,267,108 | 0 | C | T | 100.0%
| 50.5
/ NA
| 30 | intergenic (‑279/‑89) | fruB/setB | fused fructose‑specific PTS enzyme IIA component and HPr component/lactose/glucose efflux system |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/30); total (0/30) |
CAATCAGCAACAGTGAAATGGCATTTTGACTATTCGTGGCGCTTTTGATTTCGCTGTCTGTTT > W3110S.gb/2267079‑2267141
|
cAATCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGtt < 1:32641/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:15267/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:8722/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:86107/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:83724/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:82162/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:78693/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:75870/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:74504/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:69154/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:68353/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:67263/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:65890/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:65039/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:627/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:61030/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:56641/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:49573/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:48025/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:4726/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:34880/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:34868/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:26216/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:24946/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:21891/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:20722/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:19701/62‑1 (MQ=255)
aaTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:14062/62‑1 (MQ=255)
aTCAGCAACAGTGAAATGGCATTTTGATTATTCGTGGCGCTTTTGATTTCGCTGTCTGttt < 1:44866/61‑1 (MQ=255)
aGTGAAATGTCATTTTGATTATTCGTTGCGCTTTTGATTTCGCTGTCTGttt < 1:58802/52‑1 (MQ=255)
|
CAATCAGCAACAGTGAAATGGCATTTTGACTATTCGTGGCGCTTTTGATTTCGCTGTCTGTTT > W3110S.gb/2267079‑2267141
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
